RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB8827" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB8827 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32965622 32965622 PRJEB8827f_S_NODE_2178_length_284_cov_3.032129_g2158_i0 PRJEB8827 2178 284 3.032129 8.61124636 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 71.6 3.34e-12   NR XP_643357.1 352472 g2158 i0 42.2 0.950704225352113 90 51 94 1 276 10 272 361 XP_643357.1 protein disulfide isomerase [Dictyostelium discoideum AX4] diamond 270 71.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
33050811 33050811 PRJEB8827h_S_NODE_2413_length_223_cov_2.718085_g2394_i0 PRJEB8827 2413 223 2.718085 6.06132955 Polysphondylium violaceum 133409 Evosea other_Eukaryota 50.4 2.41e-5   NR KAF2071651.1 133409 g2394 i0 43.6 0.739910313901345 55 29 74 1 1 165 119 171 KAF2071651.1 hypothetical protein CYY_007026 [Polysphondylium violaceum] diamond 165 50.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;