RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB83711" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83711 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28897458 28897458 PRJEB83711_P_NODE_57248_length_253_cov_1.722222_g56982_i0 PRJEB83711 57248 253 1.722222 4.35722166 Mycoplasma sp. HU2 2108 Bacteria Bacteria 150 4.289999999999999e-40   NR WP_050517556.1 1664275 g56982 i0 97.6 0.99604743083004 84 2 99.6 0 253 2 615 698 WP_050517556.1 ABC transporter permease [Mycoplasma sp. HU2014] diamond 252 150 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014
31266687 31266687 PRJEB83711_P_NODE_57915_length_253_cov_0.866667_g57649_i0 PRJEB83711 57915 253 0.866667 2.19266751 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 42.4 0.0119   NR MDV3188738.1 2754999 g57649 i0 55.9 0.403162055335968 34 15 40.3 0 213 112 41 74 MDV3188738.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 102 42.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
32374004 32374004 PRJEB83711_P_NODE_67339_length_248_cov_0.891429_g67073_i0 PRJEB83711 67339 248 0.891429 2.21074392 Tenericutes bacterium ADurb.BinA155 1852922 Bacteria Bacteria 110 3.35e-26   NR OPZ37301.1 1852922 g67073 i0 63.4 0.991935483870968 82 30 99.2 0 1 246 206 287 OPZ37301.1 MAG: Iron hydrogenase 1 [Tenericutes bacterium ADurb.BinA155] diamond 246 110 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium ADurb.BinA155

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;