RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB83711" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJEB83711 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27097493 27097493 PRJEB83711_P_NODE_62062_length_251_cov_0.876404_g61796_i0 PRJEB83711 62062 251 0.876404 2.19977404 Methanobrevibacter sp. 66852 Archaea Archaea 87.8 1.68e-19   NR MBO7212442.1 66852 g61796 i0 67.3 0.621513944223108 52 17 62.2 0 1 156 130 181 MBO7212442.1 hypothetical protein [Methanobrevibacter sp.] diamond 156 87.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27184862 27184862 PRJEB83711_P_NODE_66862_length_248_cov_0.891429_g66596_i0 PRJEB83711 66862 248 0.891429 2.21074392 Methanobrevibacter 2172 Archaea Archaea 154 1.33e-42   NR WP_330027063.1 66852 g66596 i0 85.2 1.95967741935484 81 12 98 0 248 6 305 385 WP_330027063.1 glutamate--tRNA ligase, partial [Methanobrevibacter sp.] diamond 486 154 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27382129 27382129 PRJEB83711_P_NODE_54163_length_259_cov_1.322581_g53897_i0 PRJEB83711 54163 259 1.322581 3.42548479 Methanobrevibacter sp. 66852 Archaea Archaea 108 4.45e-27   NR WP_330009041.1 66852 g53897 i0 54.7 0.996138996138996 86 39 99.6 0 259 2 81 166 WP_330009041.1 AraC family transcriptional regulator [Methanobrevibacter sp.] diamond 258 108 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27981980 27981980 PRJEB83711_P_NODE_71465_length_246_cov_0.901734_g71199_i0 PRJEB83711 71465 246 0.901734 2.21826564 Methanobrevibacter sp. UBA412 1915486 Archaea Archaea 129 6.030000000000001e-36   NR WP_413829086.1 1915486 g71199 i0 70.4 1.97560975609756 81 24 98.8 0 1 243 41 121 WP_413829086.1 response regulator [Methanobrevibacter sp. UBA412] diamond 486 129 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. UBA412
31646027 31646027 PRJEB83711_P_NODE_58597_length_253_cov_0.866667_g58331_i0 PRJEB83711 58597 253 0.866667 2.19266751 Methanobrevibacter sp. 66852 Archaea Archaea 132 3.4199999999999992e-34   NR MBO7212323.1 66852 g58331 i0 64.4 1.06719367588933 90 25 98.4 1 251 3 402 491 MBO7212323.1 peptidoglycan-binding protein [Methanobrevibacter sp.] diamond 270 132 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32342465 32342465 PRJEB83711_P_NODE_60119_length_252_cov_0.871508_g59853_i0 PRJEB83711 60119 252 0.871508 2.19620016 Methanobrevibacter sp. 66852 Archaea Archaea 151 8.459999999999998e-42   NR MBR2558764.1 66852 g59853 i0 92.8 1.97619047619048 83 6 98.8 0 2 250 260 342 MBR2558764.1 lysine--tRNA ligase [Methanobrevibacter sp.] diamond 498 151 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;