RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJEB82358" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJEB82358 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26781219 26781219 PRJEB82358_P_NODE_12341_length_286_cov_1.652582_g12330_i0 PRJEB82358 12341 286 1.652582 4.72638452 Myxococcales bacterium 2026763 Bacteria Bacteria 86.3 1.6e-19   NR MCG5054052.1 2026763 g12330 i0 71.4 0.996503496503496 49 14 51.4 0 13 159 43 91 MCG5054052.1 membrane protein insertion efficiency factor YidD [Myxococcales bacterium] diamond 285 86.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29339694 29339694 PRJEB82358_P_NODE_16069_length_255_cov_2.406593_g16058_i0 PRJEB82358 16069 255 2.406593 6.13681215 Hyalangium versicolor 2861190 Bacteria Bacteria 53.9 4.92e-6   NR WP_224363922.1 2861190 g16058 i0 80 0.941176470588235 30 6 35.3 0 255 166 394 423 WP_224363922.1 phenylacetate--CoA ligase family protein [Hyalangium versicolor] diamond 240 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium versicolor
29395432 29395432 PRJEB82358_P_NODE_12129_length_288_cov_1.283721_g12118_i0 PRJEB82358 12129 288 1.283721 3.69711648 Byssovorax 224459 Bacteria Bacteria 126 2.2299999999999996e-31   NR HWA70733.1 2268199 g12118 i0 82.4 3.125 74 13 77.1 0 279 58 1063 1136 HWA70733.1 CusA/CzcA family heavy metal efflux RND transporter [Polyangiaceae bacterium] diamond 900 126 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29876464 29876464 PRJEB82358_P_NODE_18371_length_243_cov_1.800000_g18360_i0 PRJEB82358 18371 243 1.8 4.374 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.1 7.41e-6   NR MBI5488346.1 2026735 g18360 i0 57.8 1.11111111111111 45 18 54.3 1 2 133 297 341 MBI5488346.1 C1 family peptidase [Deltaproteobacteria bacterium] diamond 270 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30002876 30002876 PRJEB82358_P_NODE_17331_length_248_cov_0.880000_g17320_i0 PRJEB82358 17331 248 0.88 2.1824 Polyangiaceae bacterium 2268199 Bacteria Bacteria 57.4 2.8e-7   NR HSQ68102.1 2268199 g17320 i0 39.6 2.18951612903226 91 43 95.6 1 2 238 428 518 HSQ68102.1 hypothetical protein [Polyangiaceae bacterium] diamond 543 57.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30595525 30595525 PRJEB82358_P_NODE_20453_length_230_cov_2.936306_g20442_i0 PRJEB82358 20453 230 2.936306 6.7535038 Pseudomonadati 3379134 Bacteria Bacteria 88.6 3.72e-19   NR MCC6999916.1 2026735 g20442 i0 46.1 1.89130434782609 76 41 99.1 0 3 230 155 230 MCC6999916.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 435 88.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30761089 30761089 PRJEB82358_P_NODE_11014_length_300_cov_3.916300_g11003_i0 PRJEB82358 11014 300 3.9163 11.7489 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.5 3.76e-4   NR MCG6909387.1 2026735 g11003 i0 60 0.45 45 12 43 2 162 290 106 146 MCG6909387.1 rhodanese-like domain-containing protein [Deltaproteobacteria bacterium] diamond 135 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31202887 31202887 PRJEB82358_P_NODE_17955_length_245_cov_1.325581_g17944_i0 PRJEB82358 17955 245 1.325581 3.24767345 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 54.7 1.91e-7   NR MBI3557754.1 2026735 g17944 i0 56.4 0.673469387755102 55 22 66.1 2 72 233 3 56 MBI3557754.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 165 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32461517 32461517 PRJEB82358_P_NODE_15839_length_257_cov_1.467391_g15828_i0 PRJEB82358 15839 257 1.467391 3.77119487 Pseudomonadati 3379134 Bacteria Bacteria 114 1.5400000000000002e-27   NR MCC6334520.1 2026763 g15828 i0 63.1 4.90272373540856 84 31 98.1 0 254 3 215 298 MCC6334520.1 AAA family ATPase [Myxococcales bacterium] diamond 1260 115 0.991304347826087 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;