RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB82358" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB82358 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27792591 27792591 PRJEB82358_P_NODE_18164_length_244_cov_1.666667_g18153_i0 PRJEB82358 18164 244 1.666667 4.06666748 Regulus satrapa 13245 Chordata Chordata 43.9 0.00205   NR NWR48587.1 13245 g18153 i0 72.7 0.55327868852459 22 6 27 0 48 113 57 78 NWR48587.1 GAK5 protein [Regulus satrapa] diamond 135 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Regulidae Regulus Regulus satrapa
32025831 32025831 PRJEB82358_P_NODE_20778_length_228_cov_2.200000_g20767_i0 PRJEB82358 20778 228 2.2 5.016 Staurois parvus 386267 Chordata Chordata 43.9 0.00152   NR CAI9587448.1 386267 g20767 i0 59.4 0.421052631578947 32 13 42.1 0 48 143 18 49 CAI9587448.1 unnamed protein product, partial [Staurois parvus] diamond 96 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32532246 32532246 PRJEB82358_P_NODE_9539_length_320_cov_1.878543_g9528_i0 PRJEB82358 9539 320 1.878543 6.0113376 Erpetoichthys calabaricus 27687 Chordata Chordata 70.5 1.18e-11   NR XP_051791274.1 27687 g9528 i0 73.5 2.8125 49 12 45 1 254 111 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 900 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;