RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB82358" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB82358 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26741682 26741682 PRJEB82358_P_NODE_15241_length_261_cov_3.563830_g15230_i0 PRJEB82358 15241 261 3.56383 9.3015963 Pseudomonadati 3379134 Bacteria Bacteria 98.6 5.779999999999999e-23   NR MDQ2945430.1 1978231 g15230 i0 55.2 1.94252873563218 87 39 100 0 1 261 5 91 MDQ2945430.1 IS21-like element helper ATPase IstB [Acidobacteriota bacterium] diamond 507 98.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26900507 26900507 PRJEB82358_P_NODE_23621_length_199_cov_7.396825_g23610_i0 PRJEB82358 23621 199 7.396825 14.71968175 Pseudomonadati 3379134 Bacteria Bacteria 102 1.8299999999999994e-23   NR MCX6597616.1 1978231 g23610 i0 84.2 6.96482412060301 57 9 85.9 0 3 173 254 310 MCX6597616.1 glycosyltransferase [Acidobacteriota bacterium] diamond 1386 102 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27571419 27571419 PRJEB82358_P_NODE_17944_length_245_cov_1.494186_g17933_i0 PRJEB82358 17944 245 1.494186 3.6607557 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 62 6.24e-9   NR HEV8039869.1 2212468 g17933 i0 47.5 0.979591836734694 80 36 95.5 4 2 235 813 888 HEV8039869.1 trypsin-like peptidase domain-containing protein [Bryobacteraceae bacterium] diamond 240 62 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28739700 28739700 PRJEB82358_P_NODE_13087_length_279_cov_1.364078_g13076_i0 PRJEB82358 13087 279 1.364078 3.80577762 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 63.5 1.76e-9   NR HEX7330309.1 2283092 g13076 i0 44.3 0.752688172043011 70 39 75.3 0 236 27 119 188 HEX7330309.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 210 63.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30002872 30002872 PRJEB82358_P_NODE_13371_length_276_cov_2.921182_g13360_i0 PRJEB82358 13371 276 2.921182 8.06246232 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 57.4 2e-8   NR HXN74906.1 3069120 g13360 i0 51.9 0.58695652173913 54 26 58.7 0 207 46 25 78 HXN74906.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 162 57.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
31772601 31772601 PRJEB82358_P_NODE_18677_length_241_cov_6.178571_g18666_i0 PRJEB82358 18677 241 6.178571 14.89035611 Acidobacteriota bacterium 1978231 Bacteria Bacteria 91.3 7.45e-21   NR PYT21880.1 1978231 g18666 i0 75 0.697095435684647 56 14 69.7 0 2 169 131 186 PYT21880.1 MAG: hypothetical protein DMG57_37270 [Acidobacteriota bacterium] diamond 168 91.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;