RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB81463" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB81463 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27192180 27192180 PRJEB81463_P_NODE_12642_length_290_cov_0.958525_g12370_i0 PRJEB81463 12642 290 0.958525 2.7797225 Amoeba proteus 5775 Tubulinea other_Eukaryota 143 5.45e-40   NR AKN09692.1 5775 g12370 i0 76 0.993103448275862 96 23 99.3 0 2 289 19 114 AKN09692.1 Tom40 [Amoeba proteus] diamond 288 143 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30729384 30729384 PRJEB81463_P_NODE_24754_length_246_cov_2.976879_g24482_i0 PRJEB81463 24754 246 2.976879 7.32312234 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 164 1.7099999999999998e-48   NR AFX73097.1 704142 g24482 i0 96.3 0.98780487804878 81 3 98.8 0 3 245 90 170 AFX73097.1 elongation factor 2 alpha, partial [Saccamoeba lacustris] diamond 243 164 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
31899205 31899205 PRJEB81463_P_NODE_20357_length_253_cov_0.866667_g20085_i0 PRJEB81463 20357 253 0.866667 2.19266751 Amoeba proteus 5775 Tubulinea other_Eukaryota 135 6.36e-37   NR AKN09689.1 5775 g20085 i0 73.8 0.99604743083004 84 22 99.6 0 1 252 88 171 AKN09689.1 Tom20 [Amoeba proteus] diamond 252 135 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;