RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB81463" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB81463 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26685985 26685985 PRJEB81463_P_NODE_23881_length_248_cov_0.891429_g23609_i0 PRJEB81463 23881 248 0.891429 2.21074392 Deinococcus sp. Leaf326 1736338 Bacteria Bacteria 125 4.29e-31   NR WP_056299193.1 1736338 g23609 i0 72.8 0.979838709677419 81 22 98 0 247 5 509 589 WP_056299193.1 VirB4 family type IV secretion system protein [Deinococcus sp. Leaf326] diamond 243 125 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. Leaf326
29339679 29339679 PRJEB81463_P_NODE_25129_length_246_cov_0.901734_g24857_i0 PRJEB81463 25129 246 0.901734 2.21826564 Thermus scotoductus 37636 Bacteria Bacteria 164 3.34e-46   NR WP_126239174.1 37636 g24857 i0 100 1.78048780487805 73 0 89 0 3 221 468 540 WP_126239174.1 type III-A CRISPR-associated protein Cas10/Csm1, partial [Thermus scotoductus] diamond 438 164 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
32398248 32398248 PRJEB81463_P_NODE_8339_length_348_cov_2.185455_g8067_i0 PRJEB81463 8339 348 2.185455 7.6053834 Bacteria 2 Bacteria Bacteria 174 5.739999999999999e-52   NR WP_264150134.1 1255275 g8067 i0 67.5 26.6034482758621 114 37 98.3 0 7 348 124 237 WP_264150134.1 MULTISPECIES: 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Oceanotoga] diamond 9258 175 0.994285714285714 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Oceanotoga  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;