RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB81327" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81327 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27634693 27634693 PRJEB81327_P_NODE_9124_length_457_cov_1.854167_g8516_i0 PRJEB81327 9124 457 1.854167 8.47354319 Desulfurellales bacterium 2482794 Bacteria Bacteria 76.3 7.32e-13   NR TXH41244.1 2482794 g8516 i0 44.8 0.571115973741794 87 48 57.1 0 1 261 328 414 TXH41244.1 MAG: hypothetical protein E6Q97_38065 [Desulfurellales bacterium] diamond 261 76.3 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
28108006 28108006 PRJEB81327_P_NODE_35565_length_268_cov_4.302564_g34957_i0 PRJEB81327 35565 268 4.302564 11.53087152 Helicobacter pylori 210 Bacteria Bacteria 48.9 2.67e-5   NR GAA9038100.1 210 g34957 i0 74.1 0.582089552238806 27 7 30.2 0 88 168 1 27 GAA9038100.1 hypothetical protein Kyoto184A_01000 [Helicobacter pylori] diamond 156 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28108010 28108010 PRJEB81327_P_NODE_44165_length_254_cov_1.696133_g43557_i0 PRJEB81327 44165 254 1.696133 4.30817782 Campylobacterota bacterium 2026809 Bacteria Bacteria 91.7 2.41e-19   NR NPA10987.1 2026809 g43557 i0 64.2 3.30708661417323 67 24 79.1 0 2 202 442 508 NPA10987.1 phosphoenolpyruvate carboxykinase (ATP) [Campylobacterota bacterium] diamond 840 91.7 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
28479816 28479816 PRJEB81327_P_NODE_22626_length_293_cov_2.586364_g22018_i0 PRJEB81327 22626 293 2.586364 7.57804652 Pseudomonadati 3379134 Bacteria Bacteria 112 3.9699999999999995e-30   NR WP_306199871.1 197 g22018 i0 100 1.02389078498294 50 0 51.2 0 1 150 5 54 WP_306199871.1 hypothetical protein, partial [Campylobacter jejuni] diamond 300 112 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
30413704 30413704 PRJEB81327_P_NODE_58653_length_244_cov_1.789474_g58045_i0 PRJEB81327 58653 244 1.789474 4.36631656 Helicobacter pylori 210 Bacteria Bacteria 57 7.53e-9   NR GAA9176259.1 210 g58045 i0 44 1.74590163934426 75 16 92.2 2 6 230 1 49 GAA9176259.1 hypothetical protein Kyoto193A_0410 [Helicobacter pylori] diamond 426 57 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31607198 31607198 PRJEB81327_P_NODE_16956_length_328_cov_1.207843_g16348_i0 PRJEB81327 16956 328 1.207843 3.96172504 root 1 Root_unresolved Root_unresolved 109 7.37e-26   NR WP_034556802.1 216 g16348 i0 55.7 5.85365853658537 106 47 97 0 8 325 234 339 WP_034556802.1 trans-sulfuration enzyme family protein [Helicobacter muridarum] diamond 1920 110 0.990909090909091 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter muridarum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;