RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB81171" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81171 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9066618 9066618 PRJEB81171_P_NODE_1488_length_542_cov_1.142857_g1365_i0 PRJEB81171 1488 542 1.142857 6.19428494 Pseudomonadati 3379134 Bacteria Bacteria 165 8.199999999999998e-44   NR WP_096333957.1 54 g1365 i0 50.8 6.60332103321033 177 86 98 1 542 12 286 461 WP_096333957.1 M4 family metallopeptidase [Nannocystis exedens] diamond 3579 166 0.993975903614458 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens
28802520 28802520 PRJEB81171_P_NODE_8588_length_249_cov_0.886364_g8461_i0 PRJEB81171 8588 249 0.886364 2.20704636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 61.6 3.44e-10   NR MBI4228837.1 2026735 g8461 i0 87.5 0.385542168674699 32 4 38.6 0 98 3 1 32 MBI4228837.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 96 61.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29529086 29529086 PRJEB81171_P_NODE_1230_length_592_cov_1.271676_g1108_i0 PRJEB81171 1230 592 1.271676 7.52832192 Myxococcales bacterium 2026763 Bacteria Bacteria 53.5 7.39e-5   NR MBX3248237.1 2026763 g1108 i0 29.8 0.613175675675676 121 78 61.3 3 539 177 102 215 MBX3248237.1 hypothetical protein [Myxococcales bacterium] diamond 363 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29718159 29718159 PRJEB81171_P_NODE_9370_length_245_cov_0.906977_g9243_i0 PRJEB81171 9370 245 0.906977 2.22209365 Polyangiaceae bacterium 2268199 Bacteria Bacteria 45.8 0.00317   NR MBK8258486.1 2268199 g9243 i0 43.5 0.563265306122449 46 24 56.3 1 96 233 688 731 MBK8258486.1 hypothetical protein [Polyangiaceae bacterium] diamond 138 45.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32846943 32846943 PRJEB81171_P_NODE_8360_length_250_cov_0.881356_g8233_i0 PRJEB81171 8360 250 0.881356 2.20339 Myxococcales bacterium 2026763 Bacteria Bacteria 42.4 0.0285   NR MCA9536847.1 2026763 g8233 i0 37.3 0.708 59 37 70.8 0 41 217 90 148 MCA9536847.1 hypothetical protein [Myxococcales bacterium] diamond 177 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;