RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB81171" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81171 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12892818 12892818 PRJEB81171_P_NODE_1891_length_479_cov_1.362069_g1767_i0 PRJEB81171 1891 479 1.362069 6.52431051 Opisthokonta 33154 Chordata Chordata 217 7.85e-66   NR XP_027306665.2 8839 g1767 i0 67.7 56.5678496868476 158 50 99 1 479 6 290 446 XP_027306665.2 60S ribosomal protein L3 [Anas platyrhynchos] diamond 27096 219 0.990867579908676 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
21816097 21816097 PRJEB81171_P_NODE_3418_length_357_cov_1.809859_g3291_i0 PRJEB81171 3418 357 1.809859 6.46119663 Metazoa 33208 Chordata Chordata 160 7.21e-44   NR XP_046764483.1 9031 g3291 i0 65.5 22.4453781512605 119 40 99.2 1 356 3 85 203 XP_046764483.1 protein transport protein Sec61 subunit alpha isoform X1 [Gallus gallus] diamond 8013 160 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
26717272 26717272 PRJEB81171_P_NODE_1061_length_635_cov_1.229537_g940_i0 PRJEB81171 1061 635 1.229537 7.80755995 Leucoraja erinaceus 7782 Chordata Chordata 47.8 0.0132   NR XP_055487001.1 7782 g940 i0 48.5 1.1007874015748 66 30 30.2 3 360 169 152 215 XP_055487001.1 E3 ubiquitin-protein ligase TRIM47-like isoform X1 [Leucoraja erinaceus] diamond 699 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
27248222 27248222 PRJEB81171_P_NODE_5763_length_282_cov_1.492823_g5636_i0 PRJEB81171 5763 282 1.492823 4.20976086 Muridae 10066 Chordata Chordata 66.6 2.49e-10   NR XP_060235202.1 10047 g5636 i0 49.3 10.1170212765957 69 35 73.4 0 73 279 935 1003 XP_060235202.1 kinesin-like protein KIF17 isoform X7 [Meriones unguiculatus] diamond 2853 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus
27571369 27571369 PRJEB81171_P_NODE_8004_length_251_cov_1.539326_g7877_i0 PRJEB81171 8004 251 1.539326 3.86370826 Pyxicephalus adspersus 30357 Chordata Chordata 57.8 2.06e-7   NR DBA17628.1 30357 g7877 i0 39.7 1.38645418326693 58 35 69.3 0 14 187 114 171 DBA17628.1 TPA: hypothetical protein GDO54_003046 [Pyxicephalus adspersus] diamond 348 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pyxicephalidae Pyxicephalus Pyxicephalus adspersus
28921643 28921643 PRJEB81171_P_NODE_9288_length_245_cov_0.906977_g9161_i0 PRJEB81171 9288 245 0.906977 2.22209365 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 119 3.39e-29   NR XP_059825434.1 79690 g9161 i0 63 21.8204081632653 81 30 99.2 0 243 1 150 230 XP_059825434.1 serine/threonine-protein kinase RIO2 [Hypanus sabinus] diamond 5346 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
29118774 29118774 PRJEB81171_P_NODE_7249_length_259_cov_1.258065_g7122_i0 PRJEB81171 7249 259 1.258065 3.25838835 Oikopleura dioica 34765 Chordata Chordata 45.4 0.00519   NR CAG5098649.1 34765 g7122 i0 41.1 1.28571428571429 56 27 64.9 1 179 12 532 581 CAG5098649.1 Oidioi.mRNA.OKI2018_I69.XSR.g15857.t1.cds [Oikopleura dioica] diamond 333 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
29206173 29206173 PRJEB81171_P_NODE_6009_length_279_cov_1.038835_g5882_i0 PRJEB81171 6009 279 1.038835 2.89834965 Opisthokonta 33154 Chordata Chordata 99.8 5.700000000000001e-22   NR XP_067959053.1 7769 g5882 i0 48.3 15.1290322580645 87 45 93.5 0 279 19 3468 3554 XP_067959053.1 LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1-like [Myxine glutinosa] diamond 4221 99.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
30027099 30027099 PRJEB81171_P_NODE_9831_length_243_cov_0.917647_g9704_i0 PRJEB81171 9831 243 0.917647 2.22988221 Metazoa 33208 Chordata Chordata 82.4 3.85e-16   NR XP_019616203.1 7741 g9704 i0 58.6 1.76543209876543 70 28 85.2 1 215 9 31 100 XP_019616203.1 PREDICTED: cAMP-regulated D2 protein-like [Branchiostoma belcheri] diamond 429 83.2 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30192150 30192150 PRJEB81171_P_NODE_5212_length_292_cov_0.785388_g5085_i0 PRJEB81171 5212 292 0.785388 2.29333296 Engystomops pustulosus 76066 Chordata Chordata 61.6 1.6e-8   NR KAG8571490.1 76066 g5085 i0 55.6 2.21917808219178 72 32 74 0 62 277 1119 1190 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 648 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32563874 32563874 PRJEB81171_P_NODE_5259_length_291_cov_1.091743_g5132_i0 PRJEB81171 5259 291 1.091743 3.17697213 Mauremys mutica 74926 Chordata Chordata 42.4 0.0427   NR KAH1178546.1 74926 g5132 i0 40.3 0.639175257731959 62 34 62.9 2 25 207 34 93 KAH1178546.1 hypothetical protein KIL84_012248 [Mauremys mutica] diamond 186 42.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;