RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB81171" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB81171 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26844620 26844620 PRJEB81171_P_NODE_7561_length_254_cov_1.077348_g7434_i0 PRJEB81171 7561 254 1.077348 2.73646392 Deinococcus roseus 392414 Bacteria Bacteria 117 1.94e-28   NR WP_189001606.1 392414 g7434 i0 65.1 5.88188976377953 83 29 98 0 252 4 22 104 WP_189001606.1 phosphoenolpyruvate carboxykinase (GTP) [Deinococcus roseus] diamond 1494 117 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus roseus
29971080 29971080 PRJEB81171_P_NODE_6471_length_272_cov_1.060302_g6344_i0 PRJEB81171 6471 272 1.060302 2.88402144 Meiothermus hypogaeus 884155 Bacteria Bacteria 43.5 0.0226   NR WP_119342060.1 884155 g6344 i0 42.6 0.518382352941177 47 27 51.8 0 1 141 2 48 WP_119342060.1 lysophospholipid acyltransferase family protein [Meiothermus hypogaeus] diamond 141 43.5 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus hypogaeus
32500544 32500544 PRJEB81171_P_NODE_9939_length_242_cov_0.923077_g9812_i0 PRJEB81171 9939 242 0.923077 2.23384634 Deinococcus budaensis 1665626 Bacteria Bacteria 132 3.5000000000000003e-34   NR WP_184027744.1 1665626 g9812 i0 91.3 0.991735537190083 80 7 99.2 0 240 1 382 461 WP_184027744.1 hypothetical protein [Deinococcus budaensis] diamond 240 132 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus budaensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;