RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB80557" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB80557 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26615261 26615261 PRJEB80557_S_NODE_8441_length_311_cov_1.740458_g8045_i0 PRJEB80557 8441 311 1.740458 5.41282438 Sulfurimonas 202746 Bacteria Bacteria 110 4.04e-26   NR WP_320342666.1 2022749 g8045 i0 62.5 10.6012861736334 88 33 84.9 0 48 311 1 88 WP_320342666.1 nucleotide sugar dehydrogenase [Sulfurimonas sp.] diamond 3297 110 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp.
28202652 28202652 PRJEB80557_S_NODE_32026_length_171_cov_2.475410_g31630_i0 PRJEB80557 32026 171 2.47541 4.2329511 Helicobacter pylori 210 Bacteria Bacteria 39.7 0.0362   NR GAA6966648.1 210 g31630 i0 65.4 0.456140350877193 26 6 40.4 1 3 71 4 29 GAA6966648.1 hypothetical protein Kyoto211A_2720 [Helicobacter pylori] diamond 78 39.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28739649 28739649 PRJEB80557_S_NODE_15467_length_238_cov_2.333333_g15071_i0 PRJEB80557 15467 238 2.333333 5.55333254 Helicobacter pylori 210 Bacteria Bacteria 73.6 2.12e-15   NR GAA6798490.1 210 g15071 i0 92.9 0.529411764705882 42 3 52.9 0 173 48 1 42 GAA6798490.1 hypothetical protein Kyoto200A_1590 [Helicobacter pylori] diamond 126 73.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31298118 31298118 PRJEB80557_S_NODE_21535_length_205_cov_1.974359_g21139_i0 PRJEB80557 21535 205 1.974359 4.04743595 Campylobacter lari 201 Bacteria Bacteria 53.9 2.22e-7   NR WP_393922211.1 201 g21139 i0 65.6 3.39512195121951 32 11 46.8 0 108 203 7 38 WP_393922211.1 4Fe-4S cluster-binding domain-containing protein, partial [Campylobacter lari] diamond 696 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;