RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB80557" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJEB80557 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28581912 28581912 PRJEB80557_S_NODE_15247_length_240_cov_1.356021_g14851_i0 PRJEB80557 15247 240 1.356021 3.2544504 Vitrella brassicaformis CCMP3155 1169540 SAR_Eukaryotes SAR_Eukaryotes 64.7 2.53e-10   NR CEL98593.1 1169540 g14851 i0 51.5 0.825 66 31 82.5 1 1 198 162 226 CEL98593.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 198 64.7 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
29213469 29213469 PRJEB80557_S_NODE_5729_length_364_cov_1.834921_g5333_i0 PRJEB80557 5729 364 1.834921 6.67911244 Euplotes focardii 36767 SAR_Eukaryotes SAR_Eukaryotes 83.2 7.25e-18   NR AAR87710.1 36767 g5333 i0 64 0.618131868131868 75 26 61 1 70 291 1 75 AAR87710.1 60S ribosomal stalk P2 subunit [Euplotes focardii] diamond 225 83.2 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes focardii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;