RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB80557" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB80557 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30445163 30445163 PRJEB80557_S_NODE_16013_length_235_cov_1.080645_g15617_i0 PRJEB80557 16013 235 1.080645 2.53951575 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 48.1 4.14e-4   NR KAH3756581.1 1580589 g15617 i0 35.4 1.00851063829787 79 45 98.3 2 3 233 512 586 KAH3756581.1 glycosyltransferase, CAZy family GT4 [Pelomyxa schiedti] diamond 237 48.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32689436 32689436 PRJEB80557_S_NODE_17120_length_228_cov_1.139665_g16724_i0 PRJEB80557 17120 228 1.139665 2.5984362 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 92.8 2.1500000000000003e-21   NR XP_012747737.1 1410327 g16724 i0 86.3 1.34210526315789 51 7 67.1 0 3 155 152 202 XP_012747737.1 hypothetical protein SAMD00019534_124860 [Acytostelium subglobosum LB1] diamond 306 92.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;