RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB7799" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7799 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32912666 32912666 PRJEB7799a_S_NODE_16809_length_158_cov_3.869919_g16774_i0 PRJEB7799 16809 158 3.869919 6.11447202 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.4 0.0162   NR TMB00790.1 2026735 g16774 i0 44.9 0.930379746835443 49 16 75.9 3 129 10 444 490 TMB00790.1 MAG: hypothetical protein E6J70_09570 [Deltaproteobacteria bacterium] diamond 147 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32930291 32930291 PRJEB7799i_S_NODE_7233_length_182_cov_1.353741_g7203_i0 PRJEB7799 7233 182 1.353741 2.46380862 Myxococcaceae bacterium 2484252 Bacteria Bacteria 41.6 0.0417   NR HLL04251.1 2484252 g7203 i0 36.2 0.774725274725275 47 30 77.5 0 3 143 132 178 HLL04251.1 hypothetical protein [Myxococcaceae bacterium] diamond 141 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
33025891 33025891 PRJEB7799g_S_NODE_10852_length_164_cov_1.472868_g10636_i0 PRJEB7799 10852 164 1.472868 2.41550352 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.00197   NR HUS66318.1 2212474 g10636 i0 48.8 1.66463414634146 41 21 75 0 37 159 857 897 HUS66318.1 protein kinase [Kofleriaceae bacterium] diamond 273 45.4 0.993392070484582 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
33066873 33066873 PRJEB7799i_S_NODE_8461_length_170_cov_2.459259_g8431_i0 PRJEB7799 8461 170 2.459259 4.1807403 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.6 0.0365   NR MBI5594090.1 2026735 g8431 i0 48.4 0.547058823529412 31 16 54.7 0 123 31 729 759 MBI5594090.1 FAD-dependent oxidoreductase [Deltaproteobacteria bacterium] diamond 93 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
33135131 33135131 PRJEB7799i_S_NODE_5591_length_203_cov_2.166667_g5561_i0 PRJEB7799 5591 203 2.166667 4.39833401 Myxococcaceae bacterium 2484252 Bacteria Bacteria 72 6.33e-13   NR HLL04251.1 2484252 g5561 i0 49.2 0.931034482758621 63 32 93.1 0 190 2 1 63 HLL04251.1 hypothetical protein [Myxococcaceae bacterium] diamond 189 72 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
33152152 33152152 PRJEB7799i_S_NODE_5984_length_197_cov_1.049383_g5954_i0 PRJEB7799 5984 197 1.049383 2.06728451 Myxococcaceae bacterium 2484252 Bacteria Bacteria 63.2 1e-9   NR HLL04251.1 2484252 g5954 i0 59.6 0.715736040609137 47 19 71.6 0 187 47 247 293 HLL04251.1 hypothetical protein [Myxococcaceae bacterium] diamond 141 63.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;