RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB76780" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB76780 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26781167 26781167 PRJEB76780_P_NODE_9161_length_268_cov_1.635897_g9061_i0 PRJEB76780 9161 268 1.635897 4.38420396 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 89 5.18e-19   NR HYJ80700.1 3047548 g9061 i0 64.9 0.638059701492537 57 20 63.8 0 16 186 226 282 HYJ80700.1 M15 family metallopeptidase [Longimicrobiaceae bacterium] diamond 171 89 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
27911164 27911164 PRJEB76780_P_NODE_1445_length_690_cov_1.894652_g1351_i0 PRJEB76780 1445 690 1.894652 13.0730988 Longimicrobium 1804994 Bacteria Bacteria 88.2 8.69e-17   NR WP_329683785.1 2029185 g1351 i0 43.5 1.05217391304348 115 60 50 2 322 666 97 206 WP_329683785.1 M15 family metallopeptidase [Longimicrobium sp.] diamond 726 88.6 0.99548532731377 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28265805 28265805 PRJEB76780_P_NODE_6886_length_307_cov_3.363248_g6786_i0 PRJEB76780 6886 307 3.363248 10.32517136 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 84.3 2.87e-19   NR HZB28403.1 2448054 g6786 i0 78 0.488599348534202 50 11 48.9 0 38 187 2 51 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 150 84.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29679224 29679224 PRJEB76780_P_NODE_11010_length_251_cov_0.876404_g10910_i0 PRJEB76780 11010 251 0.876404 2.19977404 FCB group 1783270 Bacteria Bacteria 116 2.66e-28   NR MFQ5679979.1 2026742 g10910 i0 65.1 14.7609561752988 83 29 99.2 0 2 250 44 126 MFQ5679979.1 NAD-dependent malic enzyme [Gemmatimonadota bacterium] diamond 3705 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;