RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB76780" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14167184 14167184 PRJEB76780_P_NODE_7652_length_292_cov_1.132420_g7552_i0 PRJEB76780 7652 292 1.13242 3.3066664 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 155 1.89e-45   NR KAI9189827.1 1313167 g7552 i0 73.7 6.70890410958904 95 25 97.6 0 286 2 50 144 KAI9189827.1 ribosomal 40S subunit protein S13 [Blastocladiella emersonii ATCC 22665] diamond 1959 155 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
27659000 27659000 PRJEB76780_P_NODE_8204_length_283_cov_1.114286_g8104_i0 PRJEB76780 8204 283 1.114286 3.15342938 Blastocladiomycetes 451460 Fungi Fungi 143 1.0499999999999999e-38   NR KAJ3358607.1 64505 g8104 i0 75.5 11.9363957597173 94 23 99.6 0 283 2 66 159 KAJ3358607.1 ABC transporter AbcH.1 [Allomyces javanicus] diamond 3378 144 0.993055555555556 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
29181811 29181811 PRJEB76780_P_NODE_11349_length_249_cov_0.886364_g11249_i0 PRJEB76780 11349 249 0.886364 2.20704636 Paraphysoderma sedebokerense 1500003 Fungi Fungi 68.6 2.61e-11   NR KAI9136537.1 1500003 g11249 i0 60.7 1.34939759036145 56 22 67.5 0 248 81 296 351 KAI9136537.1 putative alcohol dehydrogenase [Paraphysoderma sedebokerense] diamond 336 68.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;