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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJEB7614" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 35 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7614 · 35 ✖

analysis 1

  • diamond · 35 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25661677 25661677 PRJEB7614e_S_NODE_4578_length_186_cov_1.211921_g4570_i0 PRJEB7614 4578 186 1.211921 2.25417306 Undibacterium squillarum 1131567 Bacteria Bacteria 113 2.6e-28   NR WP_374520057.1 1131567 g4570 i0 100 0.951612903225806 59 0 95.2 0 186 10 52 110 WP_374520057.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase, partial [Undibacterium squillarum] diamond 177 113 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium squillarum
25933933 25933933 PRJEB7614a_S_NODE_65452_length_237_cov_5.267327_g64248_i0 PRJEB7614 65452 237 5.267327 12.48356499 Undibacterium sp. TS12 2908202 Bacteria Bacteria 133 1.84e-37   NR WP_241456916.1 2908202 g64248 i0 91.5 5.3924050632911404 71 6 89.9 0 3 215 108 178 WP_241456916.1 translation initiation factor IF-3 [Undibacterium sp. TS12] diamond 1278 133 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium sp. TS12
32912585 32912585 PRJEB7614a_S_NODE_57449_length_254_cov_2.739726_g56245_i0 PRJEB7614 57449 254 2.739726 6.95890404 Pelomonas aquatica 431058 Bacteria Bacteria 64.7 2.8e-10   NR MDG0863342.1 431058 g56245 i0 48.1 1.91338582677165 81 40 95.7 2 2 244 113 191 MDG0863342.1 PEP-CTERM sorting domain-containing protein [Pelomonas aquatica] diamond 486 64.7 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas aquatica
32912586 32912586 PRJEB7614a_S_NODE_61497_length_245_cov_4.152381_g60293_i0 PRJEB7614 61497 245 4.152381 10.17333345 Burkholderiaceae bacterium 2030806 Bacteria Bacteria 65.9 9.39e-12   NR TXI90097.1 2030806 g60293 i0 55.6 0.661224489795918 54 24 66.1 0 3 164 43 96 TXI90097.1 MAG: primosomal replication protein N [Burkholderiaceae bacterium] diamond 162 65.9 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae   Burkholderiaceae bacterium
32912587 32912587 PRJEB7614a_S_NODE_79705_length_213_cov_2.859551_g78501_i0 PRJEB7614 79705 213 2.859551 6.09084363 Undibacterium sp. TS12 2908202 Bacteria Bacteria 119 2.1399999999999997e-31   NR WP_241459615.1 2908202 g78501 i0 95.4 0.915492957746479 65 3 91.5 0 2 196 167 231 WP_241459615.1 StbB family protein [Undibacterium sp. TS12] diamond 195 119 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium sp. TS12
32929787 32929787 PRJEB7614a_S_NODE_111809_length_175_cov_0.978571_g110605_i0 PRJEB7614 111809 175 0.978571 1.71249925 Undibacterium luofuense 2828733 Bacteria Bacteria 101 5.03e-24   NR WP_212687700.1 2828733 g110605 i0 96.2 2.72571428571429 53 2 90.9 0 175 17 263 315 WP_212687700.1 transporter substrate-binding domain-containing protein [Undibacterium luofuense] diamond 477 101 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium luofuense
32929788 32929788 PRJEB7614e_S_NODE_10641_length_173_cov_1.985507_g10633_i0 PRJEB7614 10641 173 1.985507 3.43492711 Vogesella urethralis 2592656 Bacteria Bacteria 111 4.01e-27   NR WP_144371523.1 2592656 g10633 i0 100 0.988439306358382 57 0 98.8 0 171 1 46 102 WP_144371523.1 NADH-quinone oxidoreductase subunit L [Vogesella urethralis] diamond 171 111 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella urethralis
32929789 32929789 PRJEB7614e_S_NODE_17105_length_167_cov_1.287879_g17097_i0 PRJEB7614 17105 167 1.287879 2.15075793 Vogesella urethralis 2592656 Bacteria Bacteria 97.4 7.25e-22   NR WP_144370824.1 2592656 g17097 i0 97.9 0.844311377245509 47 1 84.4 0 166 26 220 266 WP_144370824.1 TonB-dependent receptor [Vogesella urethralis] diamond 141 97.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella urethralis
32946924 32946924 PRJEB7614a_S_NODE_22290_length_369_cov_2.748503_g21096_i0 PRJEB7614 22290 369 2.748503 10.14197607 Undibacterium squillarum 1131567 Bacteria Bacteria 117 1.1e-27   NR WP_374518668.1 1131567 g21096 i0 97.5 0.975609756097561 120 3 97.6 0 369 10 104 223 WP_374518668.1 S9 family peptidase [Undibacterium squillarum] diamond 360 117 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium squillarum
32946925 32946925 PRJEB7614e_S_NODE_14450_length_169_cov_1.492537_g14442_i0 PRJEB7614 14450 169 1.492537 2.52238753 Vogesella urethralis 2592656 Bacteria Bacteria 94 1.1500000000000002e-21   NR WP_144371770.1 2592656 g14442 i0 100 0.834319526627219 47 0 83.4 0 168 28 99 145 WP_144371770.1 enoyl-CoA hydratase [Vogesella urethralis] diamond 141 94 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella urethralis
32981186 32981186 PRJEB7614d_S_NODE_3307_length_159_cov_1.774194_g3269_i0 PRJEB7614 3307 159 1.774194 2.82096846 Ferrovibrio sp. 1917215 Bacteria Bacteria 41.6 0.0316   NR WP_291003281.1 1917215 g3269 i0 46.3 0.773584905660377 41 21 75.5 1 1 120 439 479 WP_291003281.1 LutB/LldF family L-lactate oxidation iron-sulfur protein [Ferrovibrio sp.] diamond 123 41.6 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Ferrovibrio Ferrovibrio sp.
32981187 32981187 PRJEB7614e_S_NODE_40659_length_154_cov_0.966387_g40651_i0 PRJEB7614 40659 154 0.966387 1.48823598 Vogesella aquatica 2984206 Bacteria Bacteria 86.3 1.58e-18   NR WP_272751087.1 2984206 g40651 i0 92.9 0.818181818181818 42 3 81.8 0 28 153 185 226 WP_272751087.1 ubiquinone anaerobic biosynthesis protein UbiV [Vogesella aquatica] diamond 126 86.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella aquatica
32981188 32981188 PRJEB7614e_S_NODE_7179_length_179_cov_1.256944_g7171_i0 PRJEB7614 7179 179 1.256944 2.24992976 Undibacterium luofuense 2828733 Bacteria Bacteria 85.1 4.26e-19   NR WP_212688600.1 2828733 g7171 i0 92 0.837988826815642 50 4 83.8 0 25 174 1 50 WP_212688600.1 flagella synthesis protein FlgN [Undibacterium luofuense] diamond 150 85.1 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium luofuense
32991689 32991689 PRJEB7614e_S_NODE_46187_length_150_cov_1.573913_g46179_i0 PRJEB7614 46187 150 1.573913 2.3608695 Vogesella 57739 Bacteria Bacteria 92 4.37e-20   NR WP_088965088.1 1192162 g46179 i0 93.9 2.94 49 3 98 0 2 148 47 95 WP_088965088.1 bifunctional diguanylate cyclase/phosphodiesterase [Vogesella sp. LIG4] diamond 441 92.8 0.991379310344828 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella sp. LIG4
33008586 33008586 PRJEB7614a_S_NODE_130363_length_158_cov_0.975610_g129159_i0 PRJEB7614 130363 158 0.97561 1.5414638 Undibacterium 401469 Bacteria Bacteria 87.4 1.88e-19   NR WP_110255945.1 401470 g129159 i0 80.8 3.9493670886076 52 10 98.7 0 3 158 117 168 WP_110255945.1 c-type cytochrome [Undibacterium pigrum] diamond 624 87.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium pigrum
33032303 33032303 PRJEB7614a_S_NODE_107348_length_179_cov_1.284722_g106144_i0 PRJEB7614 107348 179 1.284722 2.29965238 Undibacterium luofuense 2828733 Bacteria Bacteria 57.8 7.72e-8   NR WP_212688285.1 2828733 g106144 i0 90.3 0.519553072625698 31 3 52 0 3 95 384 414 WP_212688285.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [Undibacterium luofuense] diamond 93 57.8 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium luofuense
33032304 33032304 PRJEB7614a_S_NODE_134908_length_153_cov_32.788136_g133704_i0 PRJEB7614 134908 153 32.788136 50.16584808 Porphyrobacter sp. GA68 2883480 Bacteria Bacteria 52.8 3.23e-6   NR WP_228244238.1 2883480 g133704 i0 90.7 0.843137254901961 43 4 84.3 0 153 25 136 178 WP_228244238.1 alpha/beta fold hydrolase [Porphyrobacter sp. GA68] diamond 129 52.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. GA68
33032305 33032305 PRJEB7614a_S_NODE_55020_length_259_cov_5.049107_g53816_i0 PRJEB7614 55020 259 5.049107 13.07718713 Undibacterium rugosum 2762291 Bacteria Bacteria 73.2 8.91e-13   NR WP_186882359.1 2762291 g53816 i0 87 2.08494208494208 46 6 53.3 0 2 139 317 362 WP_186882359.1 RNA polymerase sigma factor RpoD [Undibacterium rugosum] diamond 540 73.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium rugosum
33049236 33049236 PRJEB7614e_S_NODE_46173_length_150_cov_2.826087_g46165_i0 PRJEB7614 46173 150 2.826087 4.2391305 Vogesella facilis 1655232 Bacteria Bacteria 41.2 0.0379   NR WP_386091683.1 1655232 g46165 i0 84.6 0.52 26 4 52 0 150 73 389 414 WP_386091683.1 ABC transporter substrate-binding protein [Vogesella facilis] diamond 78 41.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella facilis
33066304 33066304 PRJEB7614a_S_NODE_123317_length_164_cov_1.844961_g122113_i0 PRJEB7614 123317 164 1.844961 3.02573604 Undibacterium squillarum 1131567 Bacteria Bacteria 67.4 2.28e-13   NR GGX35714.1 1131567 g122113 i0 91.4 0.640243902439024 35 3 64 0 58 162 1 35 GGX35714.1 hypothetical protein GCM10010946_11510 [Undibacterium squillarum] diamond 105 67.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium squillarum
33066305 33066305 PRJEB7614e_S_NODE_4285_length_187_cov_680.460526_g4277_i0 PRJEB7614 4285 187 680.460526 1272.46118362 Vogesella aquatica 2984206 Bacteria Bacteria 53.9 1.92e-6   NR WP_272750995.1 2984206 g4277 i0 88.5 0.417112299465241 26 3 41.7 0 27 104 363 388 WP_272750995.1 Y-family DNA polymerase [Vogesella aquatica] diamond 78 53.9 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella aquatica
33076783 33076783 PRJEB7614a_S_NODE_101525_length_185_cov_2.093333_g100321_i0 PRJEB7614 101525 185 2.093333 3.87266605 Ramlibacter 174951 Bacteria Bacteria 54.7 6.54e-7   NR WP_201675760.1 1926872 g100321 i0 66.7 1.36216216216216 42 14 68.1 0 174 49 171 212 WP_201675760.1 type 4a pilus biogenesis protein PilO [Ramlibacter monticola] diamond 252 54.7 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ramlibacter Ramlibacter monticola
33076784 33076784 PRJEB7614e_S_NODE_31653_length_159_cov_1.338710_g31645_i0 PRJEB7614 31653 159 1.33871 2.1285489 Chromobacteriaceae 1499392 Bacteria Bacteria 81.3 6.45e-18   NR WP_054285054.1 397456 g31645 i0 92.9 1.58490566037736 42 3 79.2 0 158 33 62 103 WP_054285054.1 MULTISPECIES: ribosome maturation factor RimP [Gulbenkiania] diamond 252 81.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Gulbenkiania  
33083396 33083396 PRJEB7614a_S_NODE_108318_length_178_cov_1.867133_g107114_i0 PRJEB7614 108318 178 1.867133 3.32349674 Aeromonas veronii 654 Bacteria Bacteria 109 5.03e-27   NR WP_201976250.1 654 g107114 i0 94.7 0.960674157303371 57 3 96.1 0 177 7 224 280 WP_201976250.1 N-acetylneuraminate synthase [Aeromonas veronii] diamond 171 109 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii
33083397 33083397 PRJEB7614a_S_NODE_115054_length_172_cov_1.357664_g113850_i0 PRJEB7614 115054 172 1.357664 2.33518208 Undibacterium sp. 1914977 Bacteria Bacteria 48.1 1.73e-4   NR MDO8177075.1 1914977 g113850 i0 77.1 3.05232558139535 35 8 61 0 172 68 260 294 MDO8177075.1 MotA/TolQ/ExbB proton channel family protein [Undibacterium sp.] diamond 525 48.1 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium sp.
33083399 33083399 PRJEB7614a_S_NODE_76614_length_218_cov_1.666667_g75410_i0 PRJEB7614 76614 218 1.666667 3.63333406 Undibacterium squillarum 1131567 Bacteria Bacteria 91.3 2.21e-19   NR WP_189357691.1 1131567 g75410 i0 97.8 0.63302752293578 46 1 63.3 0 1 138 141 186 WP_189357691.1 prolyl oligopeptidase family serine peptidase [Undibacterium squillarum] diamond 138 91.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium squillarum
33100446 33100446 PRJEB7614a_S_NODE_28278_length_341_cov_5.359477_g27074_i0 PRJEB7614 28278 341 5.359477 18.27581657 Undibacterium squillarum 1131567 Bacteria Bacteria 57.4 9.37e-8   NR WP_189356567.1 1131567 g27074 i0 100 0.844574780058651 32 0 28.2 0 305 210 1 32 WP_189356567.1 hypothetical protein [Undibacterium squillarum] diamond 288 57.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium squillarum
33100447 33100447 PRJEB7614b_S_NODE_886_length_223_cov_1270.393617_g884_i0 PRJEB7614 886 223 1270.393617 2832.97776591 Proteus terrae 1574161 Bacteria Bacteria 42.7 0.0286   NR WP_337090726.1 1574161 g884 i0 42.9 0.565022421524664 42 24 56.5 0 169 44 60 101 WP_337090726.1 hypothetical protein [Proteus terrae] diamond 126 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus terrae
33117518 33117518 PRJEB7614a_S_NODE_103447_length_183_cov_1.351351_g102243_i0 PRJEB7614 103447 183 1.351351 2.47297233 Undibacterium luofuense 2828733 Bacteria Bacteria 87.4 2.45e-18   NR WP_212687564.1 2828733 g102243 i0 88.3 0.983606557377049 60 7 98.4 0 181 2 211 270 WP_212687564.1 murein hydrolase activator EnvC family protein [Undibacterium luofuense] diamond 180 87.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium luofuense
33117520 33117520 PRJEB7614a_S_NODE_139759_length_150_cov_1.869565_g138555_i0 PRJEB7614 139759 150 1.869565 2.8043475 Undibacterium 401469 Bacteria Bacteria 74.3 4.9e-14   NR WP_110253741.1 401469 g138555 i0 88.1 0.84 42 5 84 0 1 126 283 324 WP_110253741.1 MULTISPECIES: acetyl-CoA carboxylase carboxyltransferase subunit alpha [Undibacterium] diamond 126 74.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium  
33128028 33128028 PRJEB7614a_S_NODE_108167_length_178_cov_2.419580_g106963_i0 PRJEB7614 108167 178 2.41958 4.3068524 Undibacterium 401469 Bacteria Bacteria 70.5 2.22e-12   NR MDO9193010.1 1914977 g106963 i0 66 4.28089887640449 53 18 89.3 0 168 10 9 61 MDO9193010.1 substrate-binding domain-containing protein [Undibacterium sp.] diamond 762 70.9 0.994358251057828 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium sp.
33134653 33134653 PRJEB7614a_S_NODE_131423_length_157_cov_1.204918_g130219_i0 PRJEB7614 131423 157 1.204918 1.89172126 Aeromonas rivipollensis 948519 Bacteria Bacteria 63.9 5.83e-11   NR WP_163138201.1 948519 g130219 i0 72.7 6.72611464968153 44 12 84.1 0 157 26 37 80 WP_163138201.1 IS5 family transposase, partial [Aeromonas rivipollensis] diamond 1056 63.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas rivipollensis
33151668 33151668 PRJEB7614a_S_NODE_125224_length_162_cov_3.000000_g124020_i0 PRJEB7614 125224 162 3 4.86 Magnetococcus sp. YQC-3 2763146 Bacteria Bacteria 39.7 0.0369   NR MEO5351485.1 2763146 g124020 i0 61.8 0.62962962962963 34 9 55.6 1 161 72 44 77 MEO5351485.1 hypothetical protein [Magnetococcus sp. YQC-3] diamond 102 39.7 1 Bacteria   Pseudomonadati Pseudomonadota Magnetococcia Magnetococcales Magnetococcaceae Magnetococcus Magnetococcus sp. YQC-3
33151669 33151669 PRJEB7614a_S_NODE_91984_length_196_cov_2.925466_g90780_i0 PRJEB7614 91984 196 2.925466 5.73391336 Undibacterium crateris 2528175 Bacteria Bacteria 66.6 5.34e-13   NR WP_162019376.1 2528175 g90780 i0 75 0.612244897959184 40 10 61.2 0 37 156 1 40 WP_162019376.1 entericidin A/B family lipoprotein [Undibacterium crateris] diamond 120 66.6 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium crateris
33162084 33162084 PRJEB7614a_S_NODE_116696_length_170_cov_3.348148_g115492_i0 PRJEB7614 116696 170 3.348148 5.6918516 Burkholderiales 80840 Bacteria Bacteria 51.6 3.54e-6   NR MDP3785490.1 1914977 g115492 i0 48.2 3.91764705882353 56 29 98.8 0 168 1 39 94 MDP3785490.1 F0F1 ATP synthase subunit B [Undibacterium sp.] diamond 666 51.6 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;