RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB7614" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7614 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33015174 33015174 PRJEB7614a_S_NODE_104540_length_181_cov_30.109589_g103336_i0 PRJEB7614 104540 181 30.109589 54.49835609 Helicobacter pylori 210 Bacteria Bacteria 72.8 3.65e-15   NR GAA9184244.1 210 g103336 i0 100 0.513812154696133 31 0 51.4 0 60 152 1 31 GAA9184244.1 hypothetical protein Kyoto193A_2890 [Helicobacter pylori] diamond 93 72.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
33049235 33049235 PRJEB7614a_S_NODE_88509_length_200_cov_14.103030_g87305_i0 PRJEB7614 88509 200 14.10303 28.20606 Helicobacter pylori 210 Bacteria Bacteria 74.3 5.47e-16   NR GAA9019497.1 210 g87305 i0 91.1 0.675 45 4 67.5 0 59 193 1 45 GAA9019497.1 hypothetical protein Kyoto181A_7640 [Helicobacter pylori] diamond 135 74.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
33117519 33117519 PRJEB7614a_S_NODE_134671_length_154_cov_1.386555_g133467_i0 PRJEB7614 134671 154 1.386555 2.1352947 Helicobacter pylori 210 Bacteria Bacteria 43.1 8.33e-4   NR GAA8777965.1 210 g133467 i0 100 0.350649350649351 18 0 35.1 0 114 61 1 18 GAA8777965.1 hypothetical protein BTM122_15620 [Helicobacter pylori] diamond 54 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
33168656 33168656 PRJEB7614a_S_NODE_111040_length_175_cov_6.314286_g109836_i0 PRJEB7614 111040 175 6.314286 11.0500005 Helicobacter pylori 210 Bacteria Bacteria 57 9.14e-9   NR GAA8686254.1 210 g109836 i0 100 0.531428571428571 31 0 53.1 0 50 142 1 31 GAA8686254.1 hypothetical protein Kyoto145A_1480 [Helicobacter pylori] diamond 93 57 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;