RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB7614" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB7614 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26160817 26160817 PRJEB7614a_S_NODE_113981_length_173_cov_1.159420_g112777_i0 PRJEB7614 113981 173 1.15942 2.0057966 Arcicella aurantiaca 591202 Bacteria Bacteria 99 2.25e-22   NR WP_109743479.1 591202 g112777 i0 93 0.988439306358382 57 4 98.8 0 2 172 480 536 WP_109743479.1 molecular chaperone DnaK [Arcicella aurantiaca] diamond 171 99 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Arcicella Arcicella aurantiaca
32964132 32964132 PRJEB7614a_S_NODE_99674_length_187_cov_2.427632_g98470_i0 PRJEB7614 99674 187 2.427632 4.53967184 Flectobacillus longus 2984207 Bacteria Bacteria 87.4 5.28e-19   NR WP_283369909.1 2984207 g98470 i0 96.7 0.978609625668449 61 2 97.9 0 3 185 205 265 WP_283369909.1 30S ribosomal protein S2 [Flectobacillus longus] diamond 183 87.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Flectobacillus Flectobacillus longus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;