RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB7614" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7614 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25525657 25525657 PRJEB7614a_S_NODE_134673_length_154_cov_1.378151_g133469_i0 PRJEB7614 134673 154 1.378151 2.12235254 Streptococcus mitis 28037 Bacteria Bacteria 95.1 4.03e-22   NR WP_260471401.1 28037 g133469 i0 98 3.81818181818182 49 1 95.5 0 3 149 2 50 WP_260471401.1 Ig-like domain-containing protein, partial [Streptococcus mitis] diamond 588 95.1 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis
31171420 31171420 PRJEB7614_P_NODE_435_length_396_cov_264636.373297_g378_i0 PRJEB7614 435 396 264636.373297 1047960.03825612 Pediococcus acidilactici D3 1306952 Bacteria Bacteria 51.2 1.06e-4   NR EOA08338.1 1306952 g378 i0 82.1 0.212121212121212 28 5 21.2 0 350 267 149 176 EOA08338.1 exodeoxyribonuclease III (xth) [Pediococcus acidilactici D3] diamond 84 51.2 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici
32964131 32964131 PRJEB7614a_S_NODE_77962_length_215_cov_20.422222_g76758_i0 PRJEB7614 77962 215 20.422222 43.9077773 Streptococcus mitis 28037 Bacteria Bacteria 40.8 0.0251   NR MDU7139743.1 28037 g76758 i0 71.4 0.293023255813953 21 6 29.3 0 1 63 2 22 MDU7139743.1 hypothetical protein [Streptococcus mitis] diamond 63 40.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis
33083398 33083398 PRJEB7614a_S_NODE_28510_length_340_cov_5.137705_g27306_i0 PRJEB7614 28510 340 5.137705 17.468197 Bacillus velezensis 492670 Bacteria Bacteria 48.5 5.83e-5   NR WP_226566023.1 492670 g27306 i0 70 0.264705882352941 30 9 26.5 0 249 160 3 32 WP_226566023.1 hypothetical protein, partial [Bacillus velezensis] diamond 90 48.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus velezensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;