RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB7614" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJEB7614 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33049234 33049234 PRJEB7614a_S_NODE_71173_length_227_cov_3.041667_g69969_i0 PRJEB7614 71173 227 3.041667 6.90458409 Shorea laevis 152420 Plants Plants 75.1 1.63e-15   NR GLT72563.1 152420 g69969 i0 85.4 0.634361233480176 48 7 63.4 0 180 37 1 48 GLT72563.1 hypothetical protein SLA2020_444870 [Shorea laevis] diamond 144 75.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Dipterocarpaceae Shorea Shorea laevis
33145131 33145131 PRJEB7614d_S_NODE_4647_length_150_cov_1.278261_g4609_i0 PRJEB7614 4647 150 1.278261 1.9173915 Magnoliopsida 3398 Plants Plants 42.4 0.0148   NR CAB4273511.1 36596 g4609 i0 61.3 10.6 31 12 62 0 49 141 436 466 CAB4273511.1 unnamed protein product [Prunus armeniaca] diamond 1590 42.7 0.992974238875878 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus armeniaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;