RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB75230" and tax_phylum = "Candidatus Rokuibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB75230 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27279909 27279909 PRJEB75230_P_NODE_153883_length_245_cov_1.343023_g153701_i0 PRJEB75230 153883 245 1.343023 3.29040635 Bacteria 2 Bacteria Bacteria 43.5 0.0187   NR PYM45902.1 2053607 g153701 i0 50 2.91428571428571 44 22 53.9 0 20 151 30 73 PYM45902.1 MAG: hypothetical protein DME16_16165 [Candidatus Rokuibacteriota bacterium] diamond 714 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
31772507 31772507 PRJEB75230_P_NODE_120737_length_251_cov_0.865169_g120555_i0 PRJEB75230 120737 251 0.865169 2.17157419 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 102 5.62e-23   NR PYM08265.1 2053607 g120555 i0 57 5.8804780876494 79 34 94.4 0 1 237 598 676 PYM08265.1 MAG: 3-hydroxyacyl-CoA dehydrogenase [Candidatus Rokuibacteriota bacterium] diamond 1476 102 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;