RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJEB75230" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJEB75230 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26654070 26654070 PRJEB75230_P_NODE_160621_length_244_cov_0.900585_g160439_i0 PRJEB75230 160621 244 0.900585 2.1974274 Fusobacterium sp. 68766 Bacteria Bacteria 146 5.989999999999998e-41   NR WP_320614961.1 68766 g160439 i0 93.8 0.983606557377049 80 5 98.4 0 3 242 7 86 WP_320614961.1 vWA domain-containing protein [Fusobacterium sp.] diamond 240 146 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
26876284 26876284 PRJEB75230_P_NODE_171841_length_242_cov_1.911243_g171659_i0 PRJEB75230 171841 242 1.911243 4.62520806 Fusobacterium necrophorum 859 Bacteria Bacteria 47.8 2.55e-4   NR WP_394292706.1 859 g171659 i0 52.8 1.77272727272727 36 17 44.6 0 108 1 31 66 WP_394292706.1 endonuclease/exonuclease/phosphatase family protein [Fusobacterium necrophorum] diamond 429 47.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
28044885 28044885 PRJEB75230_P_NODE_157845_length_245_cov_0.895349_g157663_i0 PRJEB75230 157845 245 0.895349 2.19360505 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 42.4 0.0497   NR MBN1467473.1 2053555 g157663 i0 42.6 0.661224489795918 54 29 66.1 1 241 80 229 280 MBN1467473.1 acyltransferase [Fusobacteriaceae bacterium] diamond 162 42.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
28258553 28258553 PRJEB75230_P_NODE_133686_length_249_cov_0.875000_g133504_i0 PRJEB75230 133686 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 42.7 0.0113   NR WP_222702918.1 859 g133504 i0 40 3.69879518072289 55 30 62.7 2 248 93 14 68 WP_222702918.1 hypothetical protein [Fusobacterium necrophorum] diamond 921 43.1 0.990719257540603 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
29465398 29465398 PRJEB75230_P_NODE_26950_length_358_cov_1.382456_g26768_i0 PRJEB75230 26950 358 1.382456 4.94919248 Fusobacterium necrophorum 859 Bacteria Bacteria 56.2 1.47e-7   NR WP_187105728.1 859 g26768 i0 60.4 0.402234636871508 48 19 40.2 0 57 200 29 76 WP_187105728.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 144 56.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
30343430 30343430 PRJEB75230_P_NODE_154472_length_245_cov_0.895349_g154290_i0 PRJEB75230 154472 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 42.7 0.0104   NR WP_187105689.1 859 g154290 i0 57.5 1.91020408163265 40 17 49 0 244 125 10 49 WP_187105689.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 468 43.1 0.990719257540603 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
31202789 31202789 PRJEB75230_P_NODE_41795_length_325_cov_0.916667_g41613_i0 PRJEB75230 41795 325 0.916667 2.97916775 Fusobacterium necrophorum subsp. funduliforme 143387 Bacteria Bacteria 48.5 7.28e-5   NR KYM59904.1 143387 g41613 i0 54.8 1.30153846153846 42 18 37.8 1 267 145 2 43 KYM59904.1 hypothetical protein A2U09_11045 [Fusobacterium necrophorum subsp. funduliforme] diamond 423 48.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
31329716 31329716 PRJEB75230_P_NODE_153056_length_245_cov_1.790698_g152874_i0 PRJEB75230 153056 245 1.790698 4.3872101 Fusobacterium necrophorum 859 Bacteria Bacteria 78.6 1.1e-16   NR WP_222702918.1 859 g152874 i0 52.1 10.6897959183673 71 31 83.3 1 241 38 9 79 WP_222702918.1 hypothetical protein [Fusobacterium necrophorum] diamond 2619 79.3 0.991172761664565 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;