RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJEB75227" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75227 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26781113 26781113 PRJEB75227_P_NODE_8761_length_251_cov_1.151685_g8590_i0 PRJEB75227 8761 251 1.151685 2.89072935 Staurois parvus 386267 Chordata Chordata 39.7 0.0472   NR CAI9587454.1 386267 g8590 i0 72.2 0.215139442231076 18 5 21.5 0 250 197 16 33 CAI9587454.1 unnamed protein product, partial [Staurois parvus] diamond 54 39.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
26939091 26939091 PRJEB75227_P_NODE_10802_length_245_cov_0.906977_g10631_i0 PRJEB75227 10802 245 0.906977 2.22209365 Callorhinchus milii 7868 Chordata Chordata 114 2.53e-27   NR XP_007900036.2 7868 g10631 i0 68.8 8.82857142857143 80 25 98 0 243 4 1746 1825 XP_007900036.2 LOW QUALITY PROTEIN: acetyl-CoA carboxylase [Callorhinchus milii] diamond 2163 114 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28708138 28708138 PRJEB75227_P_NODE_1787_length_583_cov_1.868627_g1616_i0 PRJEB75227 1787 583 1.868627 10.89409541 Leucoraja erinaceus 7782 Chordata Chordata 47.8 0.0101   NR XP_055487001.1 7782 g1616 i0 48.5 1.19897084048027 66 30 32.9 3 186 377 152 215 XP_055487001.1 E3 ubiquitin-protein ligase TRIM47-like isoform X1 [Leucoraja erinaceus] diamond 699 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
29458220 29458220 PRJEB75227_P_NODE_5150_length_309_cov_0.991525_g4979_i0 PRJEB75227 5150 309 0.991525 3.06381225 Metazoa 33208 Chordata Chordata 179 4.809999999999999e-54   NR XP_021239395.1 8996 g4979 i0 86.3 12.7961165048544 102 14 99 0 3 308 39 140 XP_021239395.1 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Numida meleagris] diamond 3954 179 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Numididae Numida Numida meleagris
31488128 31488128 PRJEB75227_P_NODE_11276_length_243_cov_1.376471_g11105_i0 PRJEB75227 11276 243 1.376471 3.34482453 Sus scrofa 9823 Chordata Chordata 43.5 0.0205   NR XP_020946894.1 9823 g11105 i0 43.9 1.74074074074074 66 27 69.1 1 16 183 679 744 XP_020946894.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 423 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
32081610 32081610 PRJEB75227_P_NODE_11358_length_243_cov_0.917647_g11187_i0 PRJEB75227 11358 243 0.917647 2.22988221 Metazoa 33208 Chordata Chordata 57.8 1.87e-7   NR MEE6504714.1 8439 g11187 i0 49.2 2.20987654320988 59 26 72.8 1 62 238 393 447 MEE6504714.1 hypothetical protein [Ascaphus truei] diamond 537 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32113439 32113439 PRJEB75227_P_NODE_8878_length_251_cov_0.876404_g8707_i0 PRJEB75227 8878 251 0.876404 2.19977404 Metazoa 33208 Chordata Chordata 47.4 8.21e-4   NR XP_013030783.2 8845 g8707 i0 33.9 4.13545816733068 56 37 66.9 0 204 37 198 253 XP_013030783.2 mannose-binding protein [Anser cygnoides] diamond 1038 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;