RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJEB7366" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB7366 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26970711 26970711 PRJEB7366_P_NODE_12382_length_229_cov_1.329897_g11948_i0 PRJEB7366 12382 229 1.329897 3.04546413 Chthoniobacter sp. 2510640 Bacteria Bacteria 110 4.33e-26   NR MCE9611332.1 2510640 g11948 i0 71.2 2.86899563318777 73 21 95.6 0 1 219 587 659 MCE9611332.1 transketolase [Chthoniobacter sp.] diamond 657 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
27318721 27318721 PRJEB7366_P_NODE_12903_length_223_cov_1.276596_g12469_i0 PRJEB7366 12903 223 1.276596 2.84680908 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 53.9 3.35e-6   NR HEY1171809.1 2499141 g12469 i0 43.5 0.928251121076233 69 37 92.8 1 1 207 451 517 HEY1171809.1 ankyrin repeat domain-containing protein [Verrucomicrobiia bacterium] diamond 207 53.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29837282 29837282 PRJEB7366_P_NODE_19871_length_171_cov_1.176471_g19437_i0 PRJEB7366 19871 171 1.176471 2.01176541 PVC group 1783257 Bacteria Bacteria 52 7.56e-6   NR MDB6077804.1 2562705 g19437 i0 47.5 1.94736842105263 59 27 96.5 2 169 5 133 191 MDB6077804.1 Por secretion system C-terminal sorting protein [Akkermansiaceae bacterium] diamond 333 52.4 0.99236641221374 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
30097227 30097227 PRJEB7366_P_NODE_23072_length_156_cov_1.983471_g22638_i0 PRJEB7366 23072 156 1.983471 3.09421476 Verrucomicrobiota bacterium JB022 3064551 Bacteria Bacteria 84.3 1.84e-17   NR MDP0501723.1 3064551 g22638 i0 75 1 52 13 100 0 1 156 45 96 MDP0501723.1 ADP-forming succinate--CoA ligase subunit beta [Verrucomicrobiota bacterium JB022] diamond 156 84.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium JB022
30855582 30855582 PRJEB7366_P_NODE_8654_length_288_cov_1.739130_g8220_i0 PRJEB7366 8654 288 1.73913 5.0086944 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 116 9.71e-28   NR MEM9445814.1 2026799 g8220 i0 55 1.9375 100 41 100 1 288 1 510 609 MEM9445814.1 ATP-dependent chaperone ClpB [Verrucomicrobiota bacterium] diamond 558 116 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32049999 32049999 PRJEB7366_P_NODE_10718_length_251_cov_1.944444_g10284_i0 PRJEB7366 10718 251 1.944444 4.88055444 Bacteria 2 Bacteria Bacteria 90.1 8.98e-19   NR MAD25628.1 2026801 g10284 i0 47.6 4.85258964143426 82 41 95.6 2 2 241 609 690 MAD25628.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 1218 90.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32563746 32563746 PRJEB7366_P_NODE_10699_length_251_cov_2.981481_g10265_i0 PRJEB7366 10699 251 2.981481 7.48351731 Oceaniferula flava 2800421 Bacteria Bacteria 42.7 0.0407   NR WP_309489737.1 2800421 g10265 i0 38.7 0.896414342629482 75 45 88.4 1 229 8 84 158 WP_309489737.1 polyamine aminopropyltransferase [Oceaniferula flava] diamond 225 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Oceaniferula Oceaniferula flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;