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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJEB7366" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7366 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961366 3961366 PRJEB7366_P_NODE_24124_length_152_cov_3.418803_g23690_i0 PRJEB7366 24124 152 3.418803 5.19658056 Bacteria 2 Bacteria Bacteria 79.7 1.79e-16   NR MCW2957217.1 1909295 g23690 i0 83 33.9276315789474 47 8 92.8 0 141 1 1 47 MCW2957217.1 phosphopyruvate hydratase [Solirubrobacterales bacterium] diamond 5157 80.5 0.990062111801242 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
26678482 26678482 PRJEB7366_P_NODE_12461_length_228_cov_1.440415_g12027_i0 PRJEB7366 12461 228 1.440415 3.2841462 Bacteria 2 Bacteria Bacteria 45.8 0.00152   NR WP_209240589.1 1434886 g12027 i0 32.6 3.27631578947368 89 44 100 6 228 1 68 153 WP_209240589.1 RICIN domain-containing protein [Streptomyces oryzae] diamond 747 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces oryzae
26773775 26773775 PRJEB7366_P_NODE_11101_length_245_cov_3.047619_g10667_i0 PRJEB7366 11101 245 3.047619 7.46666655 FCB group 1783270 Bacteria Bacteria 84.3 1.47e-17   NR MEZ5183991.1 2201156 g10667 i0 47.4 2.88979591836735 78 41 95.5 0 239 6 166 243 MEZ5183991.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 708 85.1 0.990599294947121 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
27065653 27065653 PRJEB7366_P_NODE_15082_length_202_cov_1.185629_g14648_i0 PRJEB7366 15082 202 1.185629 2.39497058 Enteractinococcus helveticum 1837282 Bacteria Bacteria 84.7 3.48e-17   NR WP_043055727.1 1837282 g14648 i0 53.1 5.71782178217822 64 30 95 0 5 196 355 418 WP_043055727.1 AMP-binding protein [Enteractinococcus helveticum] diamond 1155 84.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Enteractinococcus Enteractinococcus helveticum
27152898 27152898 PRJEB7366_P_NODE_17282_length_185_cov_2.246667_g16848_i0 PRJEB7366 17282 185 2.246667 4.15633395 FCB group 1783270 Bacteria Bacteria 46.2 0.00103   NR HEY5113547.1 2052159 g16848 i0 48.1 2.72432432432432 54 24 87.6 1 185 24 306 355 HEY5113547.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Coriobacteriia bacterium] diamond 504 46.6 0.991416309012876 Bacteria   Bacillati Actinomycetota Coriobacteriia       Coriobacteriia bacterium
27160283 27160283 PRJEB7366_P_NODE_19022_length_175_cov_1.592857_g18588_i0 PRJEB7366 19022 175 1.592857 2.78749975 Thermoleophilia bacterium 2026888 Bacteria Bacteria 57.8 7.58e-8   NR MCW2926030.1 2026888 g18588 i0 54.4 0.977142857142857 57 26 97.7 0 172 2 381 437 MCW2926030.1 hypothetical protein [Thermoleophilia bacterium] diamond 171 57.8 1 Bacteria   Bacillati Actinomycetota Thermoleophilia       Thermoleophilia bacterium
27469481 27469481 PRJEB7366_P_NODE_22763_length_158_cov_0.975610_g22329_i0 PRJEB7366 22763 158 0.97561 1.5414638 Actinomycetes 1760 Bacteria Bacteria 58.5 2.77e-8   NR WP_052740076.1 1774 g22329 i0 53.2 7.21518987341772 47 22 89.2 0 3 143 194 240 WP_052740076.1 2OG-Fe(II) oxygenase family protein [Mycobacteroides chelonae] diamond 1140 58.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae
27476553 27476553 PRJEB7366_P_NODE_7083_length_328_cov_1.375427_g6649_i0 PRJEB7366 7083 328 1.375427 4.51140056 Mycobacterium kokjensenii 3064287 Bacteria Bacteria 69.7 2.59e-11   NR WP_308477048.1 3064287 g6649 i0 49.3 1.28048780487805 71 35 64.9 1 222 10 102 171 WP_308477048.1 DUF1214 domain-containing protein [[Mycobacterium] kokjensenii] diamond 420 69.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter [Mycobacterium] kokjensenii
28044818 28044818 PRJEB7366_P_NODE_14465_length_207_cov_1.610465_g14031_i0 PRJEB7366 14465 207 1.610465 3.33366255 Actinoplanes capillaceus 113559 Bacteria Bacteria 57.8 8.73e-9   NR GAA0439929.1 76756 g14031 i0 39.7 3.7536231884058 68 37 94.2 2 199 5 6 72 GAA0439929.1 hypothetical protein GCM10009531_32870 [Actinoplanes capillaceus] diamond 777 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes capillaceus
28107884 28107884 PRJEB7366_P_NODE_19425_length_173_cov_1.449275_g18991_i0 PRJEB7366 19425 173 1.449275 2.50724575 unclassified Streptomyces 2593676 Bacteria Bacteria 65.5 1.3e-10   NR WP_143632809.1 2593676 g18991 i0 72.2 0.624277456647399 36 10 62.4 0 170 63 342 377 WP_143632809.1 MULTISPECIES: glycine amidinotransferase [unclassified Streptomyces] diamond 108 65.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
28511292 28511292 PRJEB7366_P_NODE_21987_length_161_cov_1.269841_g21553_i0 PRJEB7366 21987 161 1.269841 2.04444401 Nocardioides 1839 Bacteria Bacteria 84 2.09e-17   NR HYJ27593.1 35761 g21553 i0 71.2 6.78260869565217 52 15 96.9 0 160 5 60 111 HYJ27593.1 aminotransferase class V-fold PLP-dependent enzyme [Nocardioides sp.] diamond 1092 84.3 0.99644128113879 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
28676483 28676483 PRJEB7366_P_NODE_10687_length_251_cov_6.819444_g10253_i0 PRJEB7366 10687 251 6.819444 17.11680444 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 43.5 0.0221   NR MFQ5554000.1 2080302 g10253 i0 45.9 0.729083665338645 61 28 66.9 2 55 222 90 150 MFQ5554000.1 hypothetical protein [Acidimicrobiia bacterium] diamond 183 43.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
28771025 28771025 PRJEB7366_P_NODE_20867_length_166_cov_1.221374_g20433_i0 PRJEB7366 20867 166 1.221374 2.02748084 Actinomycetota bacterium 2900548 Bacteria Bacteria 55.1 5.86e-7   NR NOY55561.1 2900548 g20433 i0 48.9 0.849397590361446 47 24 84.9 0 141 1 401 447 NOY55561.1 DEAD/DEAH box helicase [Actinomycetota bacterium] diamond 141 55.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29055394 29055394 PRJEB7366_P_NODE_1628_length_774_cov_2.690122_g1305_i0 PRJEB7366 1628 774 2.690122 20.82154428 Corynebacterium sp. 1720 Bacteria Bacteria 47.4 0.0427   NR MDO4927524.1 1720 g1305 i0 34.4 0.348837209302326 90 49 32.6 2 418 669 286 371 MDO4927524.1 aldehyde dehydrogenase family protein [Corynebacterium sp.] diamond 270 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp.
29774129 29774129 PRJEB7366_P_NODE_21951_length_161_cov_1.269841_g21517_i0 PRJEB7366 21951 161 1.269841 2.04444401 Streptomyces 1883 Bacteria Bacteria 43.5 0.00658   NR WP_224322998.1 51201 g21517 i0 38 3.72670807453416 50 31 93.2 0 150 1 446 495 WP_224322998.1 trypsin-like peptidase domain-containing protein [Streptomyces griseocarneus] diamond 600 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseocarneus
29869009 29869009 PRJEB7366_P_NODE_22651_length_158_cov_1.585366_g22217_i0 PRJEB7366 22651 158 1.585366 2.50487828 Streptomyces 1883 Bacteria Bacteria 42.4 0.0162   NR WP_383291335.1 3346463 g22217 i0 62.5 1.82278481012658 32 12 60.8 0 158 63 215 246 WP_383291335.1 Dot/Icm T4SS effector Zinc-dependent metalloprotease LegP [Streptomyces sp. NPDC058371] diamond 288 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC058371
30097222 30097222 PRJEB7366_P_NODE_16212_length_193_cov_1.208861_g15778_i0 PRJEB7366 16212 193 1.208861 2.33310173 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 82.8 2.73e-17   NR MCB0958566.1 2201156 g15778 i0 54.7 0.994818652849741 64 29 99.5 0 1 192 146 209 MCB0958566.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 192 82.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30128623 30128623 PRJEB7366_P_NODE_8692_length_287_cov_1.900794_g8258_i0 PRJEB7366 8692 287 1.900794 5.45527878 Mycolicibacterium holsaticum 152142 Bacteria Bacteria 43.9 0.0237   NR WP_069407521.1 152142 g8258 i0 40 0.522648083623693 50 29 52.3 1 172 23 86 134 WP_069407521.1 L,D-transpeptidase [Mycolicibacterium holsaticum] diamond 150 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium holsaticum
30248329 30248329 PRJEB7366_P_NODE_23172_length_156_cov_1.322314_g22738_i0 PRJEB7366 23172 156 1.322314 2.06280984 root 1 Root_unresolved Root_unresolved 53.5 1.73e-6   NR WP_028930989.1 54010 g22738 i0 54.7 4.46153846153846 53 15 90.4 2 142 2 365 414 WP_028930989.1 urease subunit alpha [Pseudonocardia asaccharolytica] diamond 696 53.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia asaccharolytica
30658835 30658835 PRJEB7366_P_NODE_24433_length_151_cov_2.068966_g23999_i0 PRJEB7366 24433 151 2.068966 3.12413866 Mycobacterium 1763 Bacteria Bacteria 45.1 2.78e-4   NR OOK78354.1 1768 g23999 i0 46.7 1.78807947019868 45 21 89.4 1 135 1 17 58 OOK78354.1 hypothetical protein BZL30_2049 [Mycobacterium kansasii] diamond 270 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii
30697538 30697538 PRJEB7366_P_NODE_12794_length_224_cov_1.693122_g12360_i0 PRJEB7366 12794 224 1.693122 3.79259328 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 93.6 3.07e-21   NR MCB0958566.1 2201156 g12360 i0 57.5 0.977678571428571 73 31 97.8 0 6 224 168 240 MCB0958566.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 219 93.6 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30824029 30824029 PRJEB7366_P_NODE_20594_length_167_cov_1.818182_g20160_i0 PRJEB7366 20594 167 1.818182 3.03636394 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 68.6 5.43e-13   NR HVL94931.1 2586742 g20160 i0 67.3 2.94610778443114 55 15 98.8 1 165 1 16 67 HVL94931.1 Rid family detoxifying hydrolase [Solirubrobacteraceae bacterium] diamond 492 68.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
31108227 31108227 PRJEB7366_P_NODE_17535_length_184_cov_1.134228_g17101_i0 PRJEB7366 17535 184 1.134228 2.08697952 Streptomyces atratus 1893 Bacteria Bacteria 40.4 0.0364   NR GGT61744.1 1893 g17101 i0 60.5 0.619565217391304 38 14 60.3 1 66 176 21 58 GGT61744.1 hypothetical protein GCM10010207_71750 [Streptomyces atratus] diamond 114 40.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces atratus
31171340 31171340 PRJEB7366_P_NODE_7195_length_324_cov_1.608997_g6761_i0 PRJEB7366 7195 324 1.608997 5.21315028 unclassified Micromonospora 2617518 Bacteria Bacteria 46.2 0.00603   NR WP_216932510.1 2617518 g6761 i0 36.2 1.81481481481481 94 54 83.3 3 271 2 3308 3399 WP_216932510.1 MULTISPECIES: LamG-like jellyroll fold domain-containing protein [unclassified Micromonospora] diamond 588 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora  
31329641 31329641 PRJEB7366_P_NODE_14796_length_204_cov_1.893491_g14362_i0 PRJEB7366 14796 204 1.893491 3.86272164 Nonomuraea sp. NPDC 1883105 Bacteria Bacteria 42.4 0.0301   NR WP_397348318.1 3364369 g14362 i0 36.2 0.852941176470588 58 28 72.1 1 151 5 167 224 WP_397348318.1 peptide MFS transporter [Nonomuraea sp. NPDC050556] diamond 174 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea sp. NPDC050556
31456296 31456296 PRJEB7366_P_NODE_11036_length_246_cov_2.597156_g10602_i0 PRJEB7366 11036 246 2.597156 6.38900376 Piscicoccus intestinalis 746033 Bacteria Bacteria 42.7 0.0374   NR WP_068430052.1 746033 g10602 i0 47.5 0.48780487804878 40 21 48.8 0 1 120 206 245 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 120 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis
32145017 32145017 PRJEB7366_P_NODE_14098_length_210_cov_2.514286_g13664_i0 PRJEB7366 14098 210 2.514286 5.2800006 Nocardioides 1839 Bacteria Bacteria 46.6 0.00103   NR WP_010833941.1 1839 g13664 i0 34.9 2.72857142857143 63 40 88.6 1 2 187 130 192 WP_010833941.1 MULTISPECIES: APC family permease [Nocardioides] diamond 573 46.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides  
32278962 32278962 PRJEB7366_P_NODE_9899_length_264_cov_1.497817_g9465_i0 PRJEB7366 9899 264 1.497817 3.95423688 Actinomycetota bacterium 2900548 Bacteria Bacteria 50.4 9.31e-5   NR MEK6278149.1 2900548 g9465 i0 41.3 1.5 75 39 81.8 2 30 245 23 95 MEK6278149.1 hypothetical protein [Actinomycetota bacterium] diamond 396 50.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32468813 32468813 PRJEB7366_P_NODE_20679_length_167_cov_1.212121_g20245_i0 PRJEB7366 20679 167 1.212121 2.02424207 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 42 0.025   NR HEX6887350.1 2518612 g20245 i0 41.7 0.862275449101796 48 21 86.2 1 165 22 114 154 HEX6887350.1 TDT family transporter [Candidatus Nanopelagicales bacterium] diamond 144 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
32532070 32532070 PRJEB7366_P_NODE_9239_length_277_cov_1.322314_g8805_i0 PRJEB7366 9239 277 1.322314 3.66280978 Gaiellaceae bacterium 2838783 Bacteria Bacteria 43.5 0.0266   NR HEY6584584.1 2838783 g8805 i0 55.6 0.389891696750903 36 15 39 1 277 170 91 125 HEY6584584.1 S1C family serine protease [Gaiellaceae bacterium] diamond 108 43.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
32682031 32682031 PRJEB7366_P_NODE_10720_length_251_cov_1.851852_g10286_i0 PRJEB7366 10720 251 1.851852 4.64814852 Mycobacteriaceae 1762 Bacteria Bacteria 117 1.18e-29   NR WP_163768864.1 39692 g10286 i0 65.4 4.66135458167331 78 26 93.2 1 249 16 44 120 WP_163768864.1 NAD(P)-dependent alcohol dehydrogenase [Mycolicibacterium parafortuitum] diamond 1170 118 0.991525423728814 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium parafortuitum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;