RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB73599" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB73599 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27128510 27128510 PRJEB73599_P_NODE_5382_length_275_cov_2.613821_g5095_i0 PRJEB73599 5382 275 2.613821 7.18800775 Polyangia bacterium 3058050 Bacteria Bacteria 63.5 2.56e-9   NR HEY3353040.1 3058050 g5095 i0 42.4 1.61454545454545 85 45 88.4 1 246 4 124 208 HEY3353040.1 discoidin domain-containing protein [Polyangia bacterium] diamond 444 63.5 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
27318718 27318718 PRJEB73599_P_NODE_9863_length_156_cov_1.204724_g9576_i0 PRJEB73599 9863 156 1.204724 1.87936944 Myxococcales bacterium 2026763 Bacteria Bacteria 58.9 2.17e-8   NR MBT9555978.1 2026763 g9576 i0 49 0.980769230769231 51 26 98.1 0 154 2 3298 3348 MBT9555978.1 hypothetical protein [Myxococcales bacterium] diamond 153 58.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27855382 27855382 PRJEB73599_P_NODE_2885_length_428_cov_2.268170_g2606_i0 PRJEB73599 2885 428 2.26817 9.7077676 Polyangiaceae bacterium 2268199 Bacteria Bacteria 192 1.4999999999999999e-55   NR MFO0679161.1 2268199 g2606 i0 67.1 2.04672897196262 146 44 99.5 2 427 2 159 304 MFO0679161.1 NAD-dependent malic enzyme [Polyangiaceae bacterium] diamond 876 192 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32247416 32247416 PRJEB73599_P_NODE_9018_length_171_cov_1.232394_g8731_i0 PRJEB73599 9018 171 1.232394 2.10739374 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 91.3 3.9800000000000006e-21   NR MDP2683254.1 2026735 g8731 i0 81.1 2.78947368421053 53 10 93 0 2 160 151 203 MDP2683254.1 NAD(P)H:quinone oxidoreductase [Deltaproteobacteria bacterium] diamond 477 91.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;