RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJEB73599" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB73599 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961255 3961255 PRJEB73599_P_NODE_1784_length_555_cov_3.891635_g1548_i0 PRJEB73599 1784 555 3.891635 21.59857425 Opisthokonta 33154 Chordata Chordata 305 3.9999999999999993e-103   NR XP_035672114.1 7739 g1548 i0 85.4 16.8972972972973 164 24 88.6 0 528 37 37 200 XP_035672114.1 peptidyl-prolyl cis-trans isomerase-like [Branchiostoma floridae] diamond 9378 308 0.99025974025974 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
21811943 21811943 PRJEB73599_P_NODE_3758_length_360_cov_5.942598_g3472_i0 PRJEB73599 3758 360 5.942598 21.3933528 Opisthokonta 33154 Chordata Chordata 161 6.69e-46   NR XP_021036129.1 10089 g3472 i0 78.9 564.5 109 21 89.2 1 2 322 230 338 XP_021036129.1 uncharacterized protein LOC110308115 [Mus caroli] diamond 203220 161 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
28076331 28076331 PRJEB73599_P_NODE_345_length_1239_cov_2.834711_g269_i0 PRJEB73599 345 1239 2.834711 35.12206929 Ciona intestinalis 7719 Chordata Chordata 282 1.3299999999999995e-82   NR XP_026693114.1 7719 g269 i0 43.3 1.34140435835351 277 156 67.1 1 187 1017 561 836 XP_026693114.1 thrombospondin type-1 domain-containing protein 7A isoform X8 [Ciona intestinalis] diamond 1662 282 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29048176 29048176 PRJEB73599_P_NODE_1208_length_683_cov_2.463303_g1017_i0 PRJEB73599 1208 683 2.463303 16.82435949 Mammalia 40674 Chordata Chordata 153 2.5899999999999998e-42   NR XP_045843934.1 9662 g1017 i0 50.3 27.1581259150805 155 77 68.1 0 550 86 63 217 XP_045843934.1 60S ribosomal protein L13a isoform X1 [Meles meles] diamond 18549 154 0.993506493506494 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
29869006 29869006 PRJEB73599_P_NODE_4011_length_345_cov_2.420886_g3724_i0 PRJEB73599 4011 345 2.420886 8.3520567 Cervidae 9850 Chordata Chordata 187 9.019999999999998e-56   NR OWK11568.1 46360 g3724 i0 70.4 12.0869565217391 125 25 98.3 1 341 3 68 192 OWK11568.1 hypothetical protein Celaphus_00003504 [Cervus elaphus hippelaphus] diamond 4170 187 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
29907926 29907926 PRJEB73599_P_NODE_351_length_1230_cov_2.837635_g269_i1 PRJEB73599 351 1230 2.837635 34.9029105 Ciona intestinalis 7719 Chordata Chordata 282 1.2099999999999999e-82   NR XP_026693114.1 7719 g269 i1 43.3 1.35121951219512 277 156 67.6 1 1011 181 561 836 XP_026693114.1 thrombospondin type-1 domain-containing protein 7A isoform X8 [Ciona intestinalis] diamond 1662 282 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29939517 29939517 PRJEB73599_P_NODE_4211_length_333_cov_2.305921_g3924_i0 PRJEB73599 4211 333 2.305921 7.67871693 Staurois parvus 386267 Chordata Chordata 59.7 2.24e-9   NR CAI9620946.1 386267 g3924 i0 70.3 0.333333333333333 37 11 33.3 0 135 245 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30950599 30950599 PRJEB73599_P_NODE_1374_length_637_cov_2.468750_g1017_i1 PRJEB73599 1374 637 2.46875 15.7259375 Capra hircus 9925 Chordata Chordata 157 1.53e-41   NR XDB60276.1 9925 g1017 i1 42.8 17.1522762951334 194 93 82.9 1 25 552 296 489 XDB60276.1 hypothetical protein ABFV05_013892 [Capra hircus] diamond 10926 157 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
32240115 32240115 PRJEB73599_P_NODE_7298_length_210_cov_2.055249_g7011_i0 PRJEB73599 7298 210 2.055249 4.3160229 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.5 2.41e-12   NR XP_035687608.1 7739 g7011 i0 43.8 5.82857142857143 73 34 95.7 2 5 205 197 268 XP_035687608.1 EGF-like repeat and discoidin I-like domain-containing protein 3 [Branchiostoma floridae] diamond 1224 70.9 0.994358251057828 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;