RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB73599" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB73599 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27445255 27445255 PRJEB73599_P_NODE_5183_length_284_cov_1.984314_g4896_i0 PRJEB73599 5183 284 1.984314 5.63545176 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 59.3 8.92e-8   NR WP_015468752.1 453816 g4896 i0 42.3 0.823943661971831 78 45 82.4 0 1 234 364 441 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 234 59.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29623054 29623054 PRJEB73599_P_NODE_9130_length_169_cov_1.407143_g8843_i0 PRJEB73599 9130 169 1.407143 2.37807167 Pseudobacteriovorax antillogorgiicola 1513793 Bacteria Bacteria 41.2 0.0493   NR WP_159455691.1 1513793 g8843 i0 36.2 1.02958579881657 58 35 99.4 1 2 169 291 348 WP_159455691.1 FAD-dependent oxidoreductase [Pseudobacteriovorax antillogorgiicola] diamond 174 41.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax antillogorgiicola
30919001 30919001 PRJEB73599_P_NODE_834_length_828_cov_2.382979_g675_i0 PRJEB73599 834 828 2.382979 19.73106612 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 62.4 5.99e-7   NR WP_015468758.1 453816 g675 i0 31.3 0.358695652173913 99 64 35.9 1 387 91 342 436 WP_015468758.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 297 62.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;