RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB73599" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB73599 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961322 3961322 PRJEB73599_P_NODE_9784_length_157_cov_1.671875_g9497_i0 PRJEB73599 9784 157 1.671875 2.62484375 PVC group 1783257 Bacteria Bacteria 88.6 8.21e-19   NR WP_325390658.1 49981 g9497 i0 74.5 15.5923566878981 51 13 97.5 0 2 154 275 325 WP_325390658.1 molecular chaperone HtpG [Desulfitobacterium sp.] diamond 2448 89 0.995505617977528 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium sp.
6513266 6513266 PRJEB73599_P_NODE_3646_length_369_cov_1.764706_g3360_i0 PRJEB73599 3646 369 1.764706 6.51176514 Listeria portnoyi 2713504 Bacteria Bacteria 72.8 3.2e-12   NR WP_187131572.1 2713504 g3360 i0 64.7 1.49593495934959 51 18 41.5 0 7 159 5 55 WP_187131572.1 ParA family protein [Listeria portnoyi] diamond 552 72.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria portnoyi
26907555 26907555 PRJEB73599_P_NODE_6102_length_247_cov_7.568807_g5815_i0 PRJEB73599 6102 247 7.568807 18.69495329 Clostridiales bacterium 1898207 Bacteria Bacteria 43.9 0.0148   NR NLE68665.1 1898207 g5815 i0 51.4 0.449392712550607 37 15 44.9 1 185 75 97 130 NLE68665.1 hypothetical protein [Clostridiales bacterium] diamond 111 43.9 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
29749567 29749567 PRJEB73599_P_NODE_9471_length_162_cov_3.218045_g9184_i0 PRJEB73599 9471 162 3.218045 5.2132329 Enterococcus faecium 1352 Bacteria Bacteria 61.2 3.72e-10   NR RBT11052.1 1352 g9184 i0 60 0.925925925925926 50 20 92.6 0 161 12 20 69 RBT11052.1 hypothetical protein EA95_02947, partial [Enterococcus faecium] diamond 150 61.2 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;