RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB73599" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJEB73599 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27792376 27792376 PRJEB73599_P_NODE_6064_length_249_cov_2.186364_g5777_i0 PRJEB73599 6064 249 2.186364 5.44404636 Patescibacteria group bacterium 2052139 Bacteria Bacteria 145 1.17e-42   NR MBN2854143.1 2052139 g5777 i0 82.9 2.95180722891566 82 14 98.8 0 3 248 18 99 MBN2854143.1 50S ribosomal protein L16 [Patescibacteria group bacterium] diamond 735 145 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31297988 31297988 PRJEB73599_P_NODE_6575_length_232_cov_1.891626_g6288_i0 PRJEB73599 6575 232 1.891626 4.38857232 Patescibacteria group bacterium 2052139 Bacteria Bacteria 42.4 0.00747   NR MFA6161719.1 2052139 g6288 i0 32 0.646551724137931 50 34 64.7 0 203 54 10 59 MFA6161719.1 hypothetical protein [Patescibacteria group bacterium] diamond 150 42.4 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31899051 31899051 PRJEB73599_P_NODE_7777_length_197_cov_1.297619_g7490_i0 PRJEB73599 7777 197 1.297619 2.55630943 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 65.1 2.26e-10   NR MDO8336486.1 2026720 g7490 i0 54.8 0.944162436548223 62 27 92.9 1 7 189 119 180 MDO8336486.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 186 65.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;