RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB673" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB673 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27034088 27034088 PRJEB673_P_NODE_12582_length_153_cov_1.016949_g12233_i0 PRJEB673 12582 153 1.016949 1.55593197 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 84.7 1.31e-17   NR CAH8521076.1 57078 g12233 i0 76 3.92156862745098 50 12 98 0 2 151 265 314 CAH8521076.1 unnamed protein product [Dicrocoelium dendriticum] diamond 600 84.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
28953559 28953559 PRJEB673_P_NODE_11828_length_158_cov_1.300813_g11479_i0 PRJEB673 11828 158 1.300813 2.05528454 Opisthokonta 33154 Platyhelminthes Platyhelminthes 77.8 1.14e-15   NR PAA67196.1 282301 g11479 i0 82.7 12.7784810126582 52 9 98.7 0 2 157 97 148 PAA67196.1 hypothetical protein BOX15_Mlig008787g1, partial [Macrostomum lignano] diamond 2019 78.2 0.994884910485933 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
29812889 29812889 PRJEB673_P_NODE_4131_length_480_cov_1.943820_g3794_i0 PRJEB673 4131 480 1.94382 9.330336 Protopolystoma xenopodis 117903 Platyhelminthes Platyhelminthes 147 8.56e-42   NR VEL28320.1 117903 g3794 i0 61.5 17.96875 117 45 73.1 0 3 353 43 159 VEL28320.1 unnamed protein product [Protopolystoma xenopodis] diamond 8625 147 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Protopolystoma Protopolystoma xenopodis
31266443 31266443 PRJEB673_P_NODE_8835_length_233_cov_1.207071_g8486_i0 PRJEB673 8835 233 1.207071 2.81247543 Schistosoma margrebowiei 48269 Platyhelminthes Platyhelminthes 65.5 3.16e-10   NR VDP35163.1 48269 g8486 i0 55.6 10.1201716738197 72 32 92.7 0 228 13 150 221 VDP35163.1 unnamed protein product [Schistosoma margrebowiei] diamond 2358 65.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma margrebowiei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;