RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB673" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJEB673 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17986541 17986541 PRJEB673_P_NODE_8255_length_290_cov_1.458824_g7906_i0 PRJEB673 8255 290 1.458824 4.2305896 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 139 8.2e-40   NR TMW62875.1 41045 g7906 i0 71.6 1.97586206896552 95 25 98.3 1 290 6 49 141 TMW62875.1 hypothetical protein Poli38472_005493 [Pythium oligandrum] diamond 573 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27286957 27286957 PRJEB673_P_NODE_10623_length_171_cov_1.176471_g10274_i0 PRJEB673 10623 171 1.176471 2.01176541 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 105 1.7e-25   NR KAF1322632.1 82926 g10274 i0 91.2 1 57 5 100 0 171 1 258 314 KAF1322632.1 Adp/atp translocase 1, partial [Globisporangium splendens] diamond 171 105 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
27785290 27785290 PRJEB673_P_NODE_10944_length_167_cov_1.189394_g10595_i0 PRJEB673 10944 167 1.189394 1.98628798 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 80.5 2.48e-16   NR DBA05130.1 4803 g10595 i0 66.7 4.77844311377245 54 18 97 0 164 3 141 194 DBA05130.1 TPA: hypothetical protein N0F65_004980 [Lagenidium giganteum] diamond 798 80.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28171114 28171114 PRJEB673_P_NODE_10946_length_167_cov_1.174242_g10597_i0 PRJEB673 10946 167 1.174242 1.96098414 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 77.8 1.68e-16   NR KAE9192436.1 53985 g10597 i0 72.7 7.90419161676647 55 14 98.8 1 166 2 45 98 KAE9192436.1 hypothetical protein PF005_g18457 [Phytophthora fragariae] diamond 1320 77.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
29749550 29749550 PRJEB673_P_NODE_12831_length_151_cov_1.379310_g12482_i0 PRJEB673 12831 151 1.37931 2.0827581 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 65.5 4.14e-12   NR TMW55385.1 41045 g12482 i0 86.1 0.71523178807947 36 5 71.5 0 2 109 72 107 TMW55385.1 hypothetical protein Poli38472_013276 [Pythium oligandrum] diamond 108 65.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29781394 29781394 PRJEB673_P_NODE_10711_length_170_cov_1.185185_g10362_i0 PRJEB673 10711 170 1.185185 2.0148145 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.00992   NR DAZ98250.1 4803 g10362 i0 90 0.352941176470588 20 2 35.3 0 159 100 260 279 DAZ98250.1 TPA: hypothetical protein N0F65_008935 [Lagenidium giganteum] diamond 60 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30760899 30760899 PRJEB673_P_NODE_11414_length_161_cov_1.904762_g11065_i0 PRJEB673 11414 161 1.904762 3.06666682 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 109 9.309999999999999e-28   NR KAL0585048.1 65357 g11065 i0 96.2 4.93788819875776 53 2 98.8 0 160 2 142 194 KAL0585048.1 hypothetical protein ABG067_005185 [Albugo candida] diamond 795 109 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
30918982 30918982 PRJEB673_P_NODE_11294_length_162_cov_2.291339_g10945_i0 PRJEB673 11294 162 2.291339 3.71196918 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 101 9.449999999999999e-25   NR KAG6952591.1 29920 g10945 i0 83 0.981481481481482 53 9 98.1 0 3 161 22 74 KAG6952591.1 hypothetical protein JG687_00012914, partial [Phytophthora cactorum] diamond 159 101 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
31322387 31322387 PRJEB673_P_NODE_1355_length_814_cov_2.216945_g1135_i0 PRJEB673 1355 814 2.216945 18.0459323 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 219 6.439999999999999e-67   NR KAG7400572.1 109152 g1135 i0 57.3 5.7051597051597 220 83 77.4 3 179 808 47 265 KAG7400572.1 60S ribosomal protein L7A [Phytophthora boehmeriae] diamond 4644 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
31993917 31993917 PRJEB673_P_NODE_10758_length_169_cov_1.470149_g10409_i0 PRJEB673 10758 169 1.470149 2.48455181 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 58.5 3.58e-8   NR RHY34871.1 157072 g10409 i0 39.3 2.89349112426035 56 34 99.4 0 169 2 221 276 RHY34871.1 hypothetical protein DYB32_002399 [Aphanomyces invadans] diamond 489 58.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
32025630 32025630 PRJEB673_P_NODE_10218_length_178_cov_1.853147_g9869_i0 PRJEB673 10218 178 1.853147 3.29860166 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 95.9 2.03e-21   NR TMW64158.1 41045 g9869 i0 90.6 0.893258426966292 53 5 89.3 0 3 161 402 454 TMW64158.1 hypothetical protein Poli38472_014275 [Pythium oligandrum] diamond 159 95.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;