RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB673" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB673 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27223551 27223551 PRJEB673_P_NODE_1483_length_781_cov_5.962466_g1257_i0 PRJEB673 1483 781 5.962466 46.56685946 Acidobacteriota bacterium 1978231 Bacteria Bacteria 132 4.08e-35   NR MDQ7008653.1 1978231 g1257 i0 78.9 0.345710627400768 90 19 34.6 0 668 399 22 111 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 270 132 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28076325 28076325 PRJEB673_P_NODE_8905_length_226_cov_1.418848_g8556_i0 PRJEB673 8905 226 1.418848 3.20659648 Acidobacteriota bacterium 1978231 Bacteria Bacteria 109 1.51e-26   NR RMG01453.1 1978231 g8556 i0 65.3 2.98672566371681 75 23 99.6 2 1 225 41 112 RMG01453.1 MAG: phosphoenolpyruvate carboxykinase (GTP), partial [Acidobacteriota bacterium] diamond 675 109 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30539613 30539613 PRJEB673_P_NODE_1793_length_722_cov_8.438137_g1546_i0 PRJEB673 1793 722 8.438137 60.92334914 Acidobacteriota bacterium 1978231 Bacteria Bacteria 135 1.46e-36   NR MDQ7008653.1 1978231 g1546 i0 84.9 0.357340720221607 86 13 35.7 0 141 398 24 109 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 258 135 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;