RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB673" and tax_clade = "Metamonada"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJEB673 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28044806 28044806 PRJEB673_P_NODE_10925_length_167_cov_1.257576_g10576_i0 PRJEB673 10925 167 1.257576 2.10015192 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 2.18e-6   NR XP_068367506.1 1144522 g10576 i0 50.9 1.97604790419162 55 25 97 2 165 4 102 155 XP_068367506.1 Ras-related protein Rab-14 [Tritrichomonas foetus] diamond 330 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28676472 28676472 PRJEB673_P_NODE_9947_length_184_cov_1.067114_g9598_i0 PRJEB673 9947 184 1.067114 1.96348976 Streblomastix strix 222440 Preaxostyla other_Eukaryota 75.9 1.14e-15   NR KAA6389207.1 222440 g9598 i0 55.7 1.95652173913043 61 27 99.5 0 1 183 43 103 KAA6389207.1 MAG: putative 40S ribosomal protein S12 [Streblomastix strix] diamond 360 75.9 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
30248323 30248323 PRJEB673_P_NODE_1372_length_808_cov_1.860285_g1151_i0 PRJEB673 1372 808 1.860285 15.0311028 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 312 8.81e-97   NR XP_067763333.1 348837 g1151 i0 56.6 6.03712871287129 272 112 99.5 3 2 805 411 680 XP_067763333.1 Elongation factor 2 [Spironucleus salmonicida] diamond 4878 315 0.990476190476191 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
31195568 31195568 PRJEB673_P_NODE_855_length_1000_cov_2.230052_g680_i0 PRJEB673 855 1000 2.230052 22.30052 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 203 4.100000000000001e-59   NR KAJ4459671.1 342808 g680 i0 41.8 11.4 311 162 89.7 9 992 96 12 315 KAJ4459671.1 putative Cysteine proteinase 3 [Paratrimastix pyriformis] diamond 11400 203 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;