RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB673" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJEB673 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12888444 12888444 PRJEB673_P_NODE_10451_length_174_cov_1.107914_g10102_i0 PRJEB673 10451 174 1.107914 1.92777036 Patescibacteria group bacterium 2052139 Bacteria Bacteria 82 1.94e-16   NR TXG76615.1 2052139 g10102 i0 75.4 1.96551724137931 57 14 98.3 0 173 3 119 175 TXG76615.1 MAG: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [Patescibacteria group bacterium] diamond 342 82 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29339489 29339489 PRJEB673_P_NODE_10429_length_174_cov_1.438849_g10080_i0 PRJEB673 10429 174 1.438849 2.50359726 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 52.4 4.88e-6   NR RTL06913.1 2030827 g10080 i0 43.6 0.948275862068966 55 31 94.8 0 172 8 59 113 RTL06913.1 MAG: hypothetical protein EKK58_03715 [Candidatus Dependentiae bacterium] diamond 165 52.4 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
31393092 31393092 PRJEB673_P_NODE_7596_length_312_cov_1.552347_g7247_i0 PRJEB673 7596 312 1.552347 4.84332264 Candidatus Woesebacteria bacterium 2026804 Bacteria Bacteria 44.3 0.02   NR HRN71286.1 2026804 g7247 i0 25.7 0.971153846153846 101 69 92.3 3 307 20 78 177 HRN71286.1 hypothetical protein [Candidatus Woesebacteria bacterium] diamond 303 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Woeseibacteriota         Candidatus Woesebacteria bacterium
32215500 32215500 PRJEB673_P_NODE_6118_length_354_cov_1.680251_g5769_i0 PRJEB673 6118 354 1.680251 5.94808854 Minisyncoccota bacterium 2053589 Bacteria Bacteria 79 3.66e-16   NR MDR3570670.1 2053589 g5769 i0 75.6 1.27118644067797 45 11 38.1 0 194 328 38 82 MDR3570670.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 450 79 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32437188 32437188 PRJEB673_P_NODE_12019_length_157_cov_0.975410_g11670_i0 PRJEB673 12019 157 0.97541 1.5313937 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 49.7 2.97e-5   NR PYM35484.1 2053607 g11670 i0 43.8 0.917197452229299 48 27 91.7 0 156 13 58 105 PYM35484.1 MAG: NIPSNAP family protein [Candidatus Rokuibacteriota bacterium] diamond 144 49.7 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;