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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJEB66218" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB66218 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7372405 7372405 PRJEB66218_P_NODE_38806_length_566_cov_4.877228_g36411_i0 PRJEB66218 38806 566 4.877228 27.60511048 Pseudomonadati 3379134 Bacteria Bacteria 122 1.5e-28   NR HWJ23621.1 2026741 g36411 i0 53.4 3.32332155477032 118 55 62.5 0 356 3 350 467 HWJ23621.1 PAS domain S-box protein [Gemmatimonadaceae bacterium] diamond 1881 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
9057901 9057901 PRJEB66218_P_NODE_113348_length_284_cov_1.748879_g110919_i0 PRJEB66218 113348 284 1.748879 4.96681636 FCB group 1783270 Bacteria Bacteria 106 2.77e-24   NR PYO67513.1 2026742 g110919 i0 58.7 10.7112676056338 92 31 97.2 1 278 3 49 133 PYO67513.1 MAG: propionyl-CoA synthetase [Gemmatimonadota bacterium] diamond 3042 107 0.990654205607477 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
10335812 10335812 PRJEB66218_P_NODE_237309_length_203_cov_0.894366_g234878_i0 PRJEB66218 237309 203 0.894366 1.81556298 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 71.6 1.44e-12   NR HEX7242695.1 3047548 g234878 i0 49.2 0.931034482758621 63 32 93.1 0 5 193 565 627 HEX7242695.1 PAS domain S-box protein [Longimicrobiaceae bacterium] diamond 189 71.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
21808999 21808999 PRJEB66218_P_NODE_202918_length_210_cov_0.872483_g200488_i0 PRJEB66218 202918 210 0.872483 1.8322143 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 82 2.68e-16   NR MCC7002205.1 2026741 g200488 i0 82.6 0.657142857142857 46 8 65.7 0 73 210 1 46 MCC7002205.1 phosphoglycerate kinase [Gemmatimonadaceae bacterium] diamond 138 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26622392 26622392 PRJEB66218_P_NODE_197321_length_211_cov_1.173333_g194891_i0 PRJEB66218 197321 211 1.173333 2.47573263 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 98.6 1.61e-22   NR HEU4682190.1 2448054 g194891 i0 68.3 1.87677725118483 63 20 89.6 0 211 23 246 308 HEU4682190.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [Gemmatimonadales bacterium] diamond 396 98.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26844390 26844390 PRJEB66218_P_NODE_232361_length_204_cov_0.909091_g229931_i0 PRJEB66218 232361 204 0.909091 1.85454564 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.00668   NR HXF96387.1 2448054 g229931 i0 31.8 1.95588235294118 66 45 97.1 0 198 1 331 396 HXF96387.1 hypothetical protein [Gemmatimonadales bacterium] diamond 399 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27279863 27279863 PRJEB66218_P_NODE_175063_length_224_cov_1.576687_g172633_i0 PRJEB66218 175063 224 1.576687 3.53177888 FCB group 1783270 Bacteria Bacteria 70.5 4.78e-12   NR HZG44020.1 2029185 g172633 i0 52.7 5.94642857142857 74 35 99.1 0 2 223 66 139 HZG44020.1 glycosyl hydrolase family 18 protein [Longimicrobium sp.] diamond 1332 70.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27602927 27602927 PRJEB66218_P_NODE_206364_length_209_cov_0.878378_g203934_i0 PRJEB66218 206364 209 0.878378 1.83581002 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.4 0.0257   NR HXY68703.1 2448054 g203934 i0 36.8 0.818181818181818 57 36 81.8 0 14 184 97 153 HXY68703.1 glycerol-3-phosphate acyltransferase [Gemmatimonadales bacterium] diamond 171 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27634422 27634422 PRJEB66218_P_NODE_180384_length_221_cov_1.100000_g177954_i0 PRJEB66218 180384 221 1.1 2.431 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.026   NR MCA9753611.1 2026742 g177954 i0 30.3 0.895927601809955 66 38 78.7 1 187 14 195 260 MCA9753611.1 hypothetical protein [Gemmatimonadota bacterium] diamond 198 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27950058 27950058 PRJEB66218_P_NODE_130585_length_261_cov_1.805000_g128156_i0 PRJEB66218 130585 261 1.805 4.71105 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 66.2 2.1e-10   NR HEX2092473.1 3047548 g128156 i0 44.8 1 87 42 93.1 1 243 1 47 133 HEX2092473.1 glycoside hydrolase family 6 protein [Longimicrobiaceae bacterium] diamond 261 66.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
28423828 28423828 PRJEB66218_P_NODE_233746_length_203_cov_1.704225_g231315_i0 PRJEB66218 233746 203 1.704225 3.45957675 Longimicrobiales bacterium 2910168 Bacteria Bacteria 55.5 6.75e-7   NR HEY0809493.1 2910168 g231315 i0 50 1.71428571428571 58 29 85.7 0 179 6 78 135 HEY0809493.1 serine/threonine-protein kinase [Longimicrobiales bacterium] diamond 348 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28732343 28732343 PRJEB66218_P_NODE_61767_length_417_cov_2.154494_g59346_i0 PRJEB66218 61767 417 2.154494 8.98423998 Pseudomonadati 3379134 Bacteria Bacteria 98.6 1.2300000000000002e-21   NR MDP9203656.1 2026742 g59346 i0 59.5 1.72661870503597 84 31 58.3 1 245 3 18 101 MDP9203656.1 class I SAM-dependent methyltransferase [Gemmatimonadota bacterium] diamond 720 99 0.995959595959596 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28739358 28739358 PRJEB66218_P_NODE_137647_length_253_cov_2.031250_g135218_i0 PRJEB66218 137647 253 2.03125 5.1390625 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 60.5 2.41e-8   NR MEO7964046.1 2026741 g135218 i0 54.8 2.15810276679842 62 25 71.1 2 71 250 3 63 MEO7964046.1 DEAD/DEAH box helicase [Gemmatimonadaceae bacterium] diamond 546 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29237590 29237590 PRJEB66218_P_NODE_216249_length_207_cov_0.890411_g213819_i0 PRJEB66218 216249 207 0.890411 1.84315077 Bacteria 2 Bacteria Bacteria 109 8.230000000000001e-26   NR HEX6597763.1 2026741 g213819 i0 70.6 16.7101449275362 68 20 98.6 0 206 3 631 698 HEX6597763.1 aminomethyl-transferring glycine dehydrogenase [Gemmatimonadaceae bacterium] diamond 3459 110 0.990909090909091 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29275955 29275955 PRJEB66218_P_NODE_140689_length_250_cov_1.814815_g138260_i0 PRJEB66218 140689 250 1.814815 4.5370375 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 46.2 0.00234   NR MDQ3556425.1 2026742 g138260 i0 43.1 0.696 58 30 69.6 2 62 235 83 137 MDQ3556425.1 glycosyltransferase family 9 protein [Gemmatimonadota bacterium] diamond 174 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29622922 29622922 PRJEB66218_P_NODE_138010_length_253_cov_1.354167_g135581_i0 PRJEB66218 138010 253 1.354167 3.42604251 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 48.5 2.73e-4   NR MBC7563517.1 2026741 g135581 i0 45.1 0.841897233201581 71 26 72.3 4 59 241 73 140 MBC7563517.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 213 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30160148 30160148 PRJEB66218_P_NODE_169912_length_227_cov_2.048193_g167482_i0 PRJEB66218 169912 227 2.048193 4.64939811 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 78.6 6.55e-15   NR PYO82571.1 2026742 g167482 i0 56 1.99559471365639 75 32 99.1 1 3 227 119 192 PYO82571.1 MAG: hypothetical protein DMD65_08360 [Gemmatimonadota bacterium] diamond 453 78.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30539532 30539532 PRJEB66218_P_NODE_198473_length_211_cov_0.866667_g196043_i0 PRJEB66218 198473 211 0.866667 1.82866737 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 41.2 0.0312   NR HEY5062495.1 2026741 g196043 i0 68 0.355450236966825 25 8 35.5 0 28 102 2 26 HEY5062495.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 75 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30570979 30570979 PRJEB66218_P_NODE_48813_length_486_cov_3.049412_g46396_i0 PRJEB66218 48813 486 3.049412 14.82014232 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 103 3.9399999999999996e-23   NR NIM48047.1 2448054 g46396 i0 40.2 1.01234567901235 164 89 96.3 3 468 1 1 163 NIM48047.1 hypothetical protein [Gemmatimonadales bacterium] diamond 492 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30690332 30690332 PRJEB66218_P_NODE_219553_length_206_cov_1.413793_g217123_i0 PRJEB66218 219553 206 1.413793 2.91241358 Pseudomonadati 3379134 Bacteria Bacteria 73.6 3.07e-13   NR MFL5515486.1 2448054 g217123 i0 82 2.18446601941748 50 9 72.8 0 204 55 109 158 MFL5515486.1 HEAT repeat domain-containing protein [Gemmatimonadales bacterium] diamond 450 73.9 0.995940460081191 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30943306 30943306 PRJEB66218_P_NODE_180334_length_221_cov_1.187500_g177904_i0 PRJEB66218 180334 221 1.1875 2.624375 Pseudomonadati 3379134 Bacteria Bacteria 124 2.6999999999999997e-31   NR HEX2209162.1 2029185 g177904 i0 78.9 2.90497737556561 71 12 96.4 1 215 3 71 138 HEX2209162.1 GMC oxidoreductase [Longimicrobium sp.] diamond 642 125 0.992 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30982000 30982000 PRJEB66218_P_NODE_132434_length_259_cov_1.510101_g130005_i0 PRJEB66218 132434 259 1.510101 3.91116159 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 66.6 1.76e-11   NR TVP60586.1 2448054 g130005 i0 43.1 0.833976833976834 72 41 83.4 0 38 253 10 81 TVP60586.1 MAG: DUF2147 domain-containing protein [Gemmatimonadales bacterium] diamond 216 66.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31013391 31013391 PRJEB66218_P_NODE_134155_length_257_cov_1.658163_g131726_i0 PRJEB66218 134155 257 1.658163 4.26147891 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 65.9 8.72e-12   NR MEE9207331.1 2026742 g131726 i0 73 1.59922178988327 37 10 43.2 0 255 145 58 94 MEE9207331.1 helix-hairpin-helix domain-containing protein [Gemmatimonadota bacterium] diamond 411 65.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31487918 31487918 PRJEB66218_P_NODE_130576_length_261_cov_1.840000_g128147_i0 PRJEB66218 130576 261 1.84 4.8024 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.9 0.0181   NR MEO8451103.1 2026742 g128147 i0 39.3 0.701149425287356 61 32 64.4 2 34 201 134 194 MEO8451103.1 amino acid permease [Gemmatimonadota bacterium] diamond 183 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32057110 32057110 PRJEB66218_P_NODE_234838_length_203_cov_0.915493_g232407_i0 PRJEB66218 234838 203 0.915493 1.85845079 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.4 0.0284   NR HWJ24561.1 2026741 g232407 i0 31 0.857142857142857 58 40 85.7 0 23 196 116 173 HWJ24561.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 174 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32215368 32215368 PRJEB66218_P_NODE_1358_length_3874_cov_3.760031_g1115_i0 PRJEB66218 1358 3874 3.760031 145.66360094 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 162 5.16e-36   NR MDH3456211.1 2026742 g1115 i0 26.1 0.909912235415591 1175 692 89.2 34 183 3638 425 1446 MDH3456211.1 hypothetical protein [Gemmatimonadota bacterium] diamond 3525 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32215464 32215464 PRJEB66218_P_NODE_49778_length_480_cov_4.816229_g47361_i0 PRJEB66218 49778 480 4.816229 23.1178992 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 81.6 5.97e-16   NR MFN2432369.1 2026742 g47361 i0 44.2 2.075 104 57 64.4 1 311 3 67 170 MFN2432369.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Gemmatimonadota bacterium] diamond 996 81.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32310564 32310564 PRJEB66218_P_NODE_188739_length_216_cov_1.103226_g186309_i0 PRJEB66218 188739 216 1.103226 2.38296816 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 48.5 2.11e-4   NR HEU4524277.1 2448054 g186309 i0 46.5 0.597222222222222 43 23 59.7 0 88 216 35 77 HEU4524277.1 hypothetical protein [Gemmatimonadales bacterium] diamond 129 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32405307 32405307 PRJEB66218_P_NODE_45939_length_506_cov_2.402247_g43524_i0 PRJEB66218 45939 506 2.402247 12.15536982 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 70.1 1.62e-10   NR HEV2132607.1 3047548 g43524 i0 39.3 0.800395256916996 135 71 75.3 4 124 504 156 287 HEV2132607.1 SWIM zinc finger family protein [Longimicrobiaceae bacterium] diamond 405 70.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
32500347 32500347 PRJEB66218_P_NODE_240739_length_202_cov_0.921986_g238308_i0 PRJEB66218 240739 202 0.921986 1.86241172 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.0214   NR HYT70547.1 2448054 g238308 i0 37.3 1.11386138613861 75 33 90.6 3 18 200 179 253 HYT70547.1 NAD-dependent epimerase/dehydratase family protein [Gemmatimonadales bacterium] diamond 225 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32752293 32752293 PRJEB66218_P_NODE_149400_length_242_cov_1.392265_g146971_i0 PRJEB66218 149400 242 1.392265 3.3692813 Longimicrobiales bacterium 2910168 Bacteria Bacteria 85.1 2.91e-17   NR HEX6558423.1 2910168 g146971 i0 53.7 1.01652892561983 82 33 99.2 3 241 2 105 183 HEX6558423.1 multicopper oxidase domain-containing protein [Longimicrobiales bacterium] diamond 246 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;