RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB66218" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJEB66218 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28265552 28265552 PRJEB66218_P_NODE_135306_length_256_cov_1.328205_g132877_i0 PRJEB66218 135306 256 1.328205 3.4002048 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 49.7 1.84e-5   NR MBP6466880.1 2053555 g132877 i0 32.4 0.796875 68 45 78.5 1 45 245 15 82 MBP6466880.1 antibiotic biosynthesis monooxygenase [Fusobacteriaceae bacterium] diamond 204 49.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
32342098 32342098 PRJEB66218_P_NODE_181599_length_220_cov_1.339623_g179169_i0 PRJEB66218 181599 220 1.339623 2.9471706 Hypnocyclicus thermotrophus 1627895 Bacteria Bacteria 43.5 0.0144   NR WP_134113611.1 1627895 g179169 i0 62.5 0.436363636363636 32 12 43.6 0 219 124 288 319 WP_134113611.1 ribose-phosphate diphosphokinase [Hypnocyclicus thermotrophus] diamond 96 43.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Hypnocyclicus Hypnocyclicus thermotrophus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;