RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32929019 32929019 PRJEB6584a_S_NODE_7641_length_163_cov_1.703125_g7621_i0 PRJEB6584 7641 163 1.703125 2.77609375 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 56.2 1.22e-7   NR MBC7979552.1 2562705 g7621 i0 60 0.828220858895706 45 18 82.8 0 27 161 130 174 MBC7979552.1 acetyltransferase [Akkermansiaceae bacterium] diamond 135 56.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
32946837 32946837 PRJEB6584o_S_NODE_77970_length_153_cov_2.525424_g77862_i0 PRJEB6584 77970 153 2.525424 3.86389872 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.2 6.67e-4   NR HOY59968.1 2026799 g77862 i0 52.5 2.92156862745098 40 16 72.5 1 132 22 3 42 HOY59968.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 447 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
33134311 33134311 PRJEB6584o_S_NODE_23671_length_192_cov_2.713376_g23563_i0 PRJEB6584 23671 192 2.713376 5.20968192 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.8 2.44e-5   NR NOS70016.1 2026799 g23563 i0 58.3 0.5625 36 15 56.3 0 190 83 232 267 NOS70016.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 108 50.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;