RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25933462 25933462 PRJEB6584o_S_NODE_5940_length_338_cov_377.095710_g5832_i0 PRJEB6584 5940 338 377.09571 1274.5834998 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 8.379999999999999e-28   NR TNN11288.1 6182 g5832 i0 73.7 13.6420118343195 76 20 67.5 0 336 109 373 448 TNN11288.1 Elongation factor 1-alpha 2 isoform 2 [Schistosoma japonicum] diamond 4611 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
26477288 26477288 PRJEB6584o_S_NODE_2176_length_466_cov_19.162413_g1708_i1 PRJEB6584 2176 466 19.162413 89.29684458 Metazoa 33208 Platyhelminthes Platyhelminthes 92.4 7.36e-20   NR VDP93023.1 27848 g1708 i1 66.1 3.74678111587983 62 21 39.9 0 460 275 139 200 VDP93023.1 unnamed protein product [Echinostoma caproni] diamond 1746 92.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Echinostoma Echinostoma caproni
33093893 33093893 PRJEB6584h_S_NODE_17102_length_183_cov_3.027027_g17040_i0 PRJEB6584 17102 183 3.027027 5.53945941 Metazoa 33208 Platyhelminthes Platyhelminthes 51.2 1.77e-5   NR XP_024356150.1 6210 g17040 i0 82.8 8.9344262295082 29 5 47.5 0 183 97 247 275 XP_024356150.1 Plasma membrane calcium-transporting ATPase [Echinococcus granulosus] diamond 1635 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
33145041 33145041 PRJEB6584h_S_NODE_34711_length_169_cov_2.731343_g34649_i0 PRJEB6584 34711 169 2.731343 4.61596967 Schistosoma 6181 Platyhelminthes Platyhelminthes 42.4 0.0117   NR RTG85524.1 6184 g34649 i0 60 3.72781065088757 30 12 53.3 0 142 53 3 32 RTG85524.1 calmodulin [Schistosoma bovis] diamond 630 42.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;