RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJEB6584 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25525521 25525521 PRJEB6584o_S_NODE_9985_length_275_cov_3818.916667_g9877_i0 PRJEB6584 9985 275 3818.916667 10502.02083425 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 90.5 8.54e-20   NR YP_009308427.1 180228 g9877 i0 76.8 0.610909090909091 56 13 61.1 0 49 216 184 239 YP_009308427.1 ribosomal protein large subunit 2 [Paramoeba pemaquidensis] diamond 168 90.5 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
25659671 25659671 PRJEB6584e_S_NODE_1330_length_232_cov_3.730964_g1315_i0 PRJEB6584 1330 232 3.730964 8.65583648 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 95.9 1.3800000000000001e-22   NR XP_004356664.1 1257118 g1315 i0 56.6 1.96551724137931 76 33 98.3 0 228 1 52 127 XP_004356664.1 rho guanine dissociation factor isoform 2, putative [Acanthamoeba castellanii str. Neff] diamond 456 95.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32911931 32911931 PRJEB6584e_S_NODE_889_length_268_cov_9.892704_g874_i0 PRJEB6584 889 268 9.892704 26.51244672 Vannella croatica 1778588 Discosea other_Eukaryota 48.1 3.71e-4   NR AUO29185.1 1778588 g874 i0 57.9 0.425373134328358 38 16 42.5 0 159 46 136 173 AUO29185.1 hypothetical protein [Vannella croatica] diamond 114 48.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
32963732 32963732 PRJEB6584o_S_NODE_19802_length_203_cov_2.851190_g19694_i0 PRJEB6584 19802 203 2.85119 5.7879157 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.7 4.54e-18   NR XP_004358308.1 1257118 g19694 i0 61.8 1.61083743842365 55 21 81.3 0 2 166 329 383 XP_004358308.1 papain family cysteine protease subfamily protein [Acanthamoeba castellanii str. Neff] diamond 327 86.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32980521 32980521 PRJEB6584e_S_NODE_499_length_318_cov_3.208481_g484_i0 PRJEB6584 499 318 3.208481 10.20296958 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 6.05e-4   NR XP_004338595.1 1257118 g484 i0 35.7 0.792452830188679 84 36 78.3 3 281 33 510 576 XP_004338595.1 cullin family protein [Acanthamoeba castellanii str. Neff] diamond 252 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32980922 32980922 PRJEB6584o_S_NODE_34859_length_176_cov_3.099291_g34751_i0 PRJEB6584 34859 176 3.099291 5.45475216 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 71.6 1.6e-13   NR XP_004356664.1 1257118 g34751 i0 63 0.784090909090909 46 17 78.4 0 1 138 153 198 XP_004356664.1 rho guanine dissociation factor isoform 2, putative [Acanthamoeba castellanii str. Neff] diamond 138 71.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32997449 32997449 PRJEB6584h_S_NODE_20947_length_178_cov_1.223776_g20885_i0 PRJEB6584 20947 178 1.223776 2.17832128 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 74.7 2.17e-15   NR 1PRQ_A 5755 g20885 i0 75 1.61797752808989 48 12 80.9 0 2 145 78 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 288 74.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33065774 33065774 PRJEB6584o_S_NODE_12541_length_248_cov_3.755869_g12433_i0 PRJEB6584 12541 248 3.755869 9.31455512 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 1.75e-8   NR XP_004334955.1 1257118 g12433 i0 48.1 0.653225806451613 54 28 65.3 0 224 63 7 60 XP_004334955.1 uncharacterized protein ACA1_096020 [Acanthamoeba castellanii str. Neff] diamond 162 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33093890 33093890 PRJEB6584e_S_NODE_3494_length_163_cov_5.000000_g3479_i0 PRJEB6584 3494 163 5 8.15 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.8 3.68e-9   NR XP_004352812.1 1257118 g3479 i0 73.5 5.04294478527607 34 9 62.6 0 5 106 57 90 XP_004352812.1 ribosomal L37ae protein family [Acanthamoeba castellanii str. Neff] diamond 822 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33099759 33099759 PRJEB6584e_S_NODE_2382_length_189_cov_1.155844_g2367_i0 PRJEB6584 2382 189 1.155844 2.18454516 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 2.95e-12   NR XP_004344818.1 1257118 g2367 i0 67.3 0.777777777777778 49 16 77.8 0 182 36 380 428 XP_004344818.1 ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33168419 33168419 PRJEB6584o_S_NODE_38432_length_173_cov_2.492754_g38324_i0 PRJEB6584 38432 173 2.492754 4.31246442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 6.27e-4   NR XP_004368149.1 1257118 g38324 i0 46.2 0.676300578034682 39 21 67.6 0 25 141 326 364 XP_004368149.1 TBC domain containing protein [Acanthamoeba castellanii str. Neff] diamond 117 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;