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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 27 ✖

analysis 1

  • diamond · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25524691 25524691 PRJEB6584o_S_NODE_23185_length_193_cov_4.651899_g23077_i0 PRJEB6584 23185 193 4.651899 8.97816507 Opisthokonta 33154 Chordata Chordata 103 2.07e-25   NR XP_064419590.1 7897 g23077 i0 84.5 79.3678756476684 58 9 90.2 0 6 179 170 227 XP_064419590.1 elongation factor 1-beta [Latimeria chalumnae] diamond 15318 103 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
26477527 26477527 PRJEB6584o_S_NODE_3248_length_411_cov_1611.574468_g3140_i0 PRJEB6584 3248 411 1611.574468 6623.57106348 Anura 8342 Chordata Chordata 118 1.1199999999999999e-28   NR CAI9567216.1 386267 g3140 i0 74.7 7.89051094890511 83 21 60.6 0 389 141 296 378 CAI9567216.1 unnamed protein product [Staurois parvus] diamond 3243 118 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32911956 32911956 PRJEB6584h_S_NODE_73873_length_156_cov_1.322314_g73811_i0 PRJEB6584 73873 156 1.322314 2.06280984 Scyliorhinus canicula 7830 Chordata Chordata 92 8.379999999999999e-23   NR XP_038645752.1 7830 g73811 i0 80.4 1.94230769230769 51 10 98.1 0 2 154 13 63 XP_038645752.1 acyl-CoA-binding protein [Scyliorhinus canicula] diamond 303 92 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
32922993 32922993 PRJEB6584e_S_NODE_1593_length_218_cov_4.032787_g1578_i0 PRJEB6584 1593 218 4.032787 8.79147566 Metazoa 33208 Chordata Chordata 59.3 3.79e-8   NR XP_021107474.1 10181 g1578 i0 58.5 23.697247706422 41 17 56.4 0 2 124 222 262 XP_021107474.1 elongation factor 1-gamma isoform X1 [Heterocephalus glaber] diamond 5166 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
32923024 32923024 PRJEB6584m_S_NODE_2433_length_154_cov_6.126050_g2421_i0 PRJEB6584 2433 154 6.12605 9.434117 Artiodactyla 91561 Chordata Chordata 76.3 3.33e-15   NR KAB0348711.1 9888 g2421 i0 82 22.4025974025974 50 9 97.4 0 152 3 93 142 KAB0348711.1 hypothetical protein FD754_013568 [Muntiacus muntjak] diamond 3450 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
32957434 32957434 PRJEB6584h_S_NODE_71650_length_157_cov_1.655738_g71588_i0 PRJEB6584 71650 157 1.655738 2.59950866 Metazoa 33208 Chordata Chordata 45.1 0.00179   NR XP_069461531.1 8296 g71588 i0 42 8.80891719745223 50 27 95.5 1 8 157 173 220 XP_069461531.1 multiple epidermal growth factor-like domains protein 10 isoform X2 [Ambystoma mexicanum] diamond 1383 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
32963466 32963466 PRJEB6584h_S_NODE_7930_length_215_cov_5.200000_g7868_i0 PRJEB6584 7930 215 5.2 11.18 Protopterus annectens 7888 Chordata Chordata 98.2 7.6900000000000005e-22   NR XP_043938962.1 7888 g7868 i0 95.9 14.0511627906977 49 2 68.4 0 178 32 633 681 XP_043938962.1 glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 [Protopterus annectens] diamond 3021 98.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
32974519 32974519 PRJEB6584h_S_NODE_3554_length_275_cov_1.775000_g3492_i0 PRJEB6584 3554 275 1.775 4.88125 Branchiostoma 7737 Chordata Chordata 48.9 5.38e-5   NR XP_035679171.1 7739 g3492 i0 82.1 10.5054545454545 28 5 30.5 0 212 129 75 102 XP_035679171.1 transcription and mRNA export factor ENY2 [Branchiostoma floridae] diamond 2889 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32974522 32974522 PRJEB6584h_S_NODE_7402_length_219_cov_2.336957_g7340_i0 PRJEB6584 7402 219 2.336957 5.11793583 Metazoa 33208 Chordata Chordata 43.5 0.0103   NR KAG8565506.1 76066 g7340 i0 58.3 5.17808219178082 36 13 49.3 1 17 124 5 38 KAG8565506.1 hypothetical protein GDO81_012882 [Engystomops pustulosus] diamond 1134 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32980518 32980518 PRJEB6584e_S_NODE_315_length_361_cov_8.828221_g300_i0 PRJEB6584 315 361 8.828221 31.86987781 Pleurodeles waltl 8319 Chordata Chordata 83.6 7.75e-18   NR KAJ1178703.1 8319 g300 i0 52.1 6 73 35 60.7 0 310 92 9 81 KAJ1178703.1 hypothetical protein NDU88_003945 [Pleurodeles waltl] diamond 2166 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32981164 32981164 PRJEB6584p_S_NODE_40395_length_166_cov_3.419847_g40364_i0 PRJEB6584 40395 166 3.419847 5.67694602 Branchiostoma floridae 7739 Chordata Chordata 42 0.02   NR XP_035674994.1 7739 g40364 i0 62.5 2.00602409638554 24 9 43.4 0 160 89 167 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 333 42 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
33008488 33008488 PRJEB6584d_S_NODE_10827_length_187_cov_1.032895_g10759_i0 PRJEB6584 10827 187 1.032895 1.93151365 Opisthokonta 33154 Chordata Chordata 70.5 4.55e-13   NR CBY23715.1 34765 g10759 i0 56.7 12.8021390374332 60 25 94.7 1 2 178 126 185 CBY23715.1 unnamed protein product [Oikopleura dioica] diamond 2394 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
33008490 33008490 PRJEB6584e_S_NODE_2051_length_201_cov_1.879518_g2036_i0 PRJEB6584 2051 201 1.879518 3.77783118 Metazoa 33208 Chordata Chordata 84 6.63e-17   NR XP_069100182.1 8319 g2036 i0 67.2 37.0597014925373 67 22 100 0 201 1 626 692 XP_069100182.1 major vault protein [Pleurodeles waltl] diamond 7449 84 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
33008518 33008518 PRJEB6584m_S_NODE_1131_length_193_cov_3.056962_g1119_i0 PRJEB6584 1131 193 3.056962 5.89993666 Mammalia 40674 Chordata Chordata 53.5 3.07e-6   NR XP_025775084.1 9696 g1119 i0 97.5 14.1917098445596 40 1 62.2 0 193 74 450 489 XP_025775084.1 LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 1A [Puma concolor] diamond 2739 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Puma Puma concolor
33014836 33014836 PRJEB6584o_S_NODE_26244_length_187_cov_4.276316_g26136_i0 PRJEB6584 26244 187 4.276316 7.99671092 Narcine bancroftii 1343680 Chordata Chordata 56.6 3.67e-8   NR XP_069777055.1 1343680 g26136 i0 59.2 7.13903743315508 49 20 78.6 0 6 152 88 136 XP_069777055.1 large ribosomal subunit protein eL14 [Narcine bancroftii] diamond 1335 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
33048758 33048758 PRJEB6584o_S_NODE_14965_length_228_cov_4.538860_g14857_i0 PRJEB6584 14965 228 4.53886 10.3486008 Petromyzon marinus 7757 Chordata Chordata 84 5.69e-19   NR XP_032801518.1 7757 g14857 i0 95.3 2.82894736842105 43 2 56.6 0 3 131 62 104 XP_032801518.1 cytochrome c-like [Petromyzon marinus] diamond 645 84 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
33059660 33059660 PRJEB6584e_S_NODE_1621_length_217_cov_3.384615_g1606_i0 PRJEB6584 1621 217 3.384615 7.34461455 Opisthokonta 33154 Chordata Chordata 68.9 6.65e-13   NR AFK11590.1 7868 g1606 i0 65.3 16.258064516129 49 17 67.7 0 213 67 74 122 AFK11590.1 ribosomal protein L22 like 1-like protein [Callorhinchus milii] diamond 3528 69.3 0.994227994227994 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
33059679 33059679 PRJEB6584l_S_NODE_20885_length_161_cov_2.523810_g20733_i0 PRJEB6584 20885 161 2.52381 4.0633341 Mammalia 40674 Chordata Chordata 75.9 2.53e-14   NR XP_004872582.1 10181 g20733 i0 83.7 1.84472049689441 49 8 91.3 0 156 10 329 377 XP_004872582.1 A-kinase anchor protein 8 [Heterocephalus glaber] diamond 297 76.6 0.990861618798956 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
33065718 33065718 PRJEB6584m_S_NODE_445_length_265_cov_28.334783_g433_i0 PRJEB6584 445 265 28.334783 75.08717495 Choloepus didactylus 27675 Chordata Chordata 74.3 1.09e-13   NR XP_037703436.1 27675 g433 i0 91.3 0.520754716981132 46 4 52.1 0 25 162 205 250 XP_037703436.1 basic proline-rich protein-like [Choloepus didactylus] diamond 138 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
33099756 33099756 PRJEB6584e_S_NODE_1350_length_231_cov_3.061224_g1335_i0 PRJEB6584 1350 231 3.061224 7.07142744 Patagioenas fasciata monilis 372326 Chordata Chordata 77.8 4.36e-16   NR OPJ87061.1 372326 g1335 i0 59.6 2.02597402597403 52 21 67.5 0 3 158 26 77 OPJ87061.1 hypothetical protein AV530_010031 [Patagioenas fasciata monilis] diamond 468 77.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Patagioenas Patagioenas fasciata
33116830 33116830 PRJEB6584h_S_NODE_82831_length_151_cov_1.887931_g82769_i0 PRJEB6584 82831 151 1.887931 2.85077581 Clavelina lepadiformis 159417 Chordata Chordata 58.5 2.84e-8   NR CAK8676643.1 159417 g82769 i0 59.5 0.834437086092715 42 17 83.4 0 151 26 1164 1205 CAK8676643.1 unnamed protein product [Clavelina lepadiformis] diamond 126 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
33116876 33116876 PRJEB6584l_S_NODE_20423_length_162_cov_3.433071_g20271_i0 PRJEB6584 20423 162 3.433071 5.56157502 Myotis myotis 51298 Chordata Chordata 54.7 9.57e-8   NR KAF6385940.1 51298 g20271 i0 92.6 0.5 27 2 50 0 162 82 53 79 KAF6385940.1 acidic nuclear phosphoprotein 32 family member A [Myotis myotis] diamond 81 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
33145035 33145035 PRJEB6584e_S_NODE_231_length_397_cov_3.566298_g216_i0 PRJEB6584 231 397 3.566298 14.15820306 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 148 4.659999999999998e-42   NR XP_035658935.1 7739 g216 i0 70.5 16.3299748110831 95 28 71.8 0 397 113 29 123 XP_035658935.1 40S ribosomal protein S8-like [Branchiostoma floridae] diamond 6483 148 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
33150966 33150966 PRJEB6584e_S_NODE_2320_length_191_cov_1.538462_g2305_i0 PRJEB6584 2320 191 1.538462 2.93846242 Branchiostoma floridae 7739 Chordata Chordata 42 0.0273   NR XP_035674994.1 7739 g2305 i0 62.5 0.37696335078534 24 9 37.7 0 190 119 167 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 72 42 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
33151341 33151341 PRJEB6584o_S_NODE_26296_length_187_cov_2.875000_g26188_i0 PRJEB6584 26296 187 2.875 5.37625 Circaetus pectoralis 321084 Chordata Chordata 42.4 0.025   NR NXW18758.1 321084 g26188 i0 48.8 0.657754010695187 41 21 65.8 0 187 65 651 691 NXW18758.1 CLCN2 protein [Circaetus pectoralis] diamond 123 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Circaetus Circaetus pectoralis
33167946 33167946 PRJEB6584e_S_NODE_3424_length_164_cov_2.480620_g3409_i0 PRJEB6584 3424 164 2.48062 4.0682168 Petromyzon marinus 7757 Chordata Chordata 90.9 4.37e-22   NR XP_032801518.1 7757 g3409 i0 91.5 7.70121951219512 47 4 86 0 2 142 58 104 XP_032801518.1 cytochrome c-like [Petromyzon marinus] diamond 1263 90.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
33167961 33167961 PRJEB6584h_S_NODE_46016_length_165_cov_1.992308_g45954_i0 PRJEB6584 46016 165 1.992308 3.2873082 Xenopus tropicalis 8364 Chordata Chordata 61.6 2.91e-9   NR XP_012809139.1 8364 g45954 i0 58.5 0.963636363636364 53 22 96.4 0 7 165 2745 2797 XP_012809139.1 E3 ubiquitin-protein ligase RNF213 [Xenopus tropicalis] diamond 159 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;