RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32928991 32928991 PRJEB6584a_S_NODE_4593_length_187_cov_0.901316_g4573_i0 PRJEB6584 4593 187 0.901316 1.68546092 Nitratiruptor tergarcus 269259 Bacteria Bacteria 47 5.57e-4   NR WP_084274523.1 269259 g4573 i0 69.7 1.84491978609626 33 10 52.9 0 3 101 285 317 WP_084274523.1 RCC1 domain-containing protein [Nitratiruptor tergarcus] diamond 345 47 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor tergarcus
33065697 33065697 PRJEB6584l_S_NODE_23989_length_154_cov_3.722689_g23837_i0 PRJEB6584 23989 154 3.722689 5.73294106 Helicobacter pylori 210 Bacteria Bacteria 75.5 2.24e-16   NR GAA9184244.1 210 g23837 i0 100 0.623376623376623 32 0 62.3 0 31 126 1 32 GAA9184244.1 hypothetical protein Kyoto193A_2890 [Helicobacter pylori] diamond 96 75.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
33127940 33127940 PRJEB6584l_S_NODE_16279_length_174_cov_2.892086_g16127_i0 PRJEB6584 16279 174 2.892086 5.03222964 Pseudomonadati 3379134 Bacteria Bacteria 102 4.12e-27   NR WP_240384152.1 197 g16127 i0 100 1.79310344827586 52 0 89.7 0 168 13 15 66 WP_240384152.1 hypothetical protein, partial [Campylobacter jejuni] diamond 312 102 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;