RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6584" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32912482 32912482 PRJEB6584o_S_NODE_7249_length_314_cov_8.412186_g7141_i0 PRJEB6584 7249 314 8.412186 26.41426404 Methanobacteriota archaeon 2026739 Archaea Archaea 45.1 0.0136   NR MAQ04991.1 2026739 g7141 i0 39.6 0.506369426751592 53 30 50.6 1 287 129 530 580 MAQ04991.1 hypothetical protein [Methanobacteriota archaeon] diamond 159 45.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
33110856 33110856 PRJEB6584o_S_NODE_18006_length_211_cov_4.954545_g17898_i0 PRJEB6584 18006 211 4.954545 10.45408995 root 1 Root_unresolved Root_unresolved 48.1 2.86e-4   NR WP_048124017.1 170861 g17898 i0 41.1 1.87677725118483 56 33 79.6 0 4 171 227 282 WP_048124017.1 protease inhibitor I42 family protein [Methanosarcina lacustris] diamond 396 48.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris
33134027 33134027 PRJEB6584k_S_NODE_2271_length_207_cov_95.750000_g2250_i0 PRJEB6584 2271 207 95.75 198.2025 Methanomethylophilus alvi 1291540 Archaea Archaea 41.6 0.0308   NR WP_400256085.1 1291540 g2250 i0 38.2 0.797101449275362 55 25 66.7 2 161 24 79 133 WP_400256085.1 hypothetical protein [Methanomethylophilus alvi] diamond 165 41.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;