contig_metadata
6 rows where analysis = "diamond", bioproject = "PRJEB65329" and tax_phylum = "Pseudomonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5232645 | 5232645 | PRJEB65329_S_NODE_2405_length_640_cov_37.464812_g2287_i0 | PRJEB65329 | 2405 | 640 | 37.464812 | 239.7747968 | Phenylobacterium hankyongense | 1813876 | Bacteria | Bacteria | 129 | 6.519999999999998e-35 | NR | WP_207801906.1 | 1813876 | g2287 | i0 | 80.6 | 0.61875 | 67 | 13 | 31.4 | 0 | 581 | 381 | 15 | 81 | WP_207801906.1 hypothetical protein, partial [Phenylobacterium hankyongense] | diamond | 396 | 129 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Phenylobacterium | Phenylobacterium hankyongense | ||
| 26685610 | 26685610 | PRJEB65329_S_NODE_12841_length_186_cov_2.089172_g12679_i0 | PRJEB65329 | 12841 | 186 | 2.089172 | 3.88585992 | Shigella flexneri | 623 | Bacteria | Bacteria | 73.6 | 2.3e-15 | NR | MDD0148654.1 | 623 | g12679 | i0 | 54.1 | 1.96774193548387 | 61 | 28 | 98.4 | 0 | 184 | 2 | 19 | 79 | MDD0148654.1 hypothetical protein [Shigella flexneri] | diamond | 366 | 73.6 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Shigella | Shigella flexneri | ||
| 27792176 | 27792176 | PRJEB65329_S_NODE_3624_length_475_cov_8.668161_g3468_i0 | PRJEB65329 | 3624 | 475 | 8.668161 | 41.17376475 | Phenylobacterium hankyongense | 1813876 | Bacteria | Bacteria | 110 | 2.5599999999999998e-28 | NR | WP_133255066.1 | 1813876 | g3468 | i0 | 65.5 | 1.22526315789474 | 87 | 30 | 54.9 | 0 | 67 | 327 | 13 | 99 | WP_133255066.1 hypothetical protein, partial [Phenylobacterium hankyongense] | diamond | 582 | 110 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Phenylobacterium | Phenylobacterium hankyongense | ||
| 30027032 | 30027032 | PRJEB65329_S_NODE_7351_length_270_cov_4.763485_g7189_i0 | PRJEB65329 | 7351 | 270 | 4.763485 | 12.8614095 | root | 1 | Root_unresolved | Root_unresolved | 62 | 2.24e-10 | NR | WP_337453918.1 | 562 | g7189 | i0 | 93.9 | 28.2333333333333 | 33 | 2 | 36.7 | 0 | 1 | 99 | 46 | 78 | WP_337453918.1 MC/SLC25 family protein, partial [Escherichia coli] | diamond | 7623 | 62.4 | 0.993589743589744 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 31891751 | 31891751 | PRJEB65329_S_NODE_14637_length_171_cov_6.105634_g14475_i0 | PRJEB65329 | 14637 | 171 | 6.105634 | 10.44063414 | root | 1 | Root_unresolved | Root_unresolved | 49.3 | 2.74e-5 | NR | MAO08131.1 | 232 | g14475 | i0 | 100 | 621.789473684211 | 22 | 0 | 38.6 | 0 | 3 | 68 | 136 | 157 | MAO08131.1 hypothetical protein [Alteromonas sp.] | diamond | 106326 | 49.3 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Alteromonadaceae | Alteromonas | Alteromonas sp. | ||
| 32745302 | 32745302 | PRJEB65329_S_NODE_6540_length_294_cov_8.901887_g6378_i0 | PRJEB65329 | 6540 | 294 | 8.901887 | 26.17154778 | root | 1 | Root_unresolved | Root_unresolved | 101 | 8.5e-26 | NR | WP_336505983.1 | 573 | g6378 | i0 | 89.2 | 5.22448979591837 | 65 | 6 | 65.3 | 1 | 69 | 260 | 24 | 88 | WP_336505983.1 translation machinery-associated protein 7, partial [Klebsiella pneumoniae] | diamond | 1536 | 101 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;