RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB65329" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB65329 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29654525 29654525 PRJEB65329_S_NODE_12650_length_188_cov_1.886792_g12488_i0 PRJEB65329 12650 188 1.886792 3.54716896 Streptomyces caniscabiei 2746961 Bacteria Bacteria 41.2 0.0372   NR WP_319106296.1 2746961 g12488 i0 47.2 0.574468085106383 36 19 57.4 0 171 64 37 72 WP_319106296.1 peptidase inhibitor family I36 protein [Streptomyces caniscabiei] diamond 108 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces caniscabiei
30855383 30855383 PRJEB65329_S_NODE_9034_length_234_cov_2.702439_g8872_i0 PRJEB65329 9034 234 2.702439 6.32370726 Streptomyces sp. KM77-8 3074435 Bacteria Bacteria 44.3 0.00927   NR BFO18157.1 3074435 g8872 i0 40 0.897435897435897 70 39 89.7 1 211 2 421 487 BFO18157.1 hypothetical protein SHKM778_45450 [Streptomyces sp. KM77-8] diamond 210 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces haneummycinicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;