RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB65099" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJEB65099 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11608466 11608466 PRJEB65099_P_NODE_4910_length_253_cov_0.866667_g4805_i0 PRJEB65099 4910 253 0.866667 2.19266751 Prokaryotic dsDNA virus sp. 2591644 Viruses Viruses 102 8.77e-26   NR QDP66566.1 2591644 g4805 i0 65.7 0.794466403162055 67 23 79.4 0 251 51 80 146 QDP66566.1 MAG: hypothetical protein Tp1111DCM1126091_72 [Prokaryotic dsDNA virus sp.] diamond 201 102 1 Viruses               Prokaryotic dsDNA virus sp.
27191819 27191819 PRJEB65099_P_NODE_6902_length_242_cov_0.923077_g6797_i0 PRJEB65099 6902 242 0.923077 2.23384634 Prokaryotic dsDNA virus sp. 2591644 Viruses Viruses 49.7 1.06e-4   NR QDP66599.1 2591644 g6797 i0 50 0.570247933884298 46 23 57 0 1 138 203 248 QDP66599.1 MAG: hypothetical protein Tp1111DCM1126091_105 [Prokaryotic dsDNA virus sp.] diamond 138 49.7 1 Viruses               Prokaryotic dsDNA virus sp.
31582650 31582650 PRJEB65099_P_NODE_5076_length_252_cov_0.871508_g4971_i0 PRJEB65099 5076 252 0.871508 2.19620016 Haloarcula sinaiiensis tailed virus 1 1262530 Viruses Viruses 52 2.37e-5   NR YP_008083053.1 1262530 g4971 i0 39.1 1.72619047619048 64 35 71.4 2 234 55 244 307 YP_008083053.1 head morphogenesis [Haloarcula sinaiiensis tailed virus 1] diamond 435 52 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Kirjokansivirales Shortaselviridae Lonfivirus Lonfivirus codicilli
32151965 32151965 PRJEB65099_P_NODE_5258_length_251_cov_0.876404_g5153_i0 PRJEB65099 5258 251 0.876404 2.19977404 Pseudomonas phage Zuri 2604899 Viruses Viruses 104 1.11e-24   NR YP_009883001.1 2604899 g5153 i0 53.8 0.956175298804781 80 36 95.6 1 4 243 170 248 YP_009883001.1 ATPase [Pseudomonas phage Zuri] diamond 240 104 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Schitoviridae Zurivirus Zurivirus zuri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;