RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26622198 26622198 PRJEB64798_P_NODE_243741_length_154_cov_2.542857_g241975_i0 PRJEB64798 243741 154 2.542857 3.91599978 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 44.3 0.00219   NR YP_003540823.1 5778 g241975 i0 55.3 0.74025974025974 38 17 74 0 15 128 141 178 YP_003540823.1 hypothetical protein HaveOM_p12 [Vermamoeba vermiformis] diamond 114 44.3 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28928544 28928544 PRJEB64798_P_NODE_184968_length_172_cov_4.934959_g183202_i0 PRJEB64798 184968 172 4.934959 8.48812948 Amoeba proteus 5775 Tubulinea other_Eukaryota 59.7 1.45e-8   NR AAD33718.1 5775 g183202 i0 61.9 0.732558139534884 42 16 73.3 0 6 131 508 549 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 126 59.7 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30318784 30318784 PRJEB64798_P_NODE_75192_length_222_cov_7.179191_g73426_i0 PRJEB64798 75192 222 7.179191 15.93780402 Amoeba proteus 5775 Tubulinea other_Eukaryota 68.6 2.37e-11   NR AAD33718.1 5775 g73426 i0 52.4 1.66216216216216 63 30 85.1 0 10 198 569 631 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 369 68.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31550943 31550943 PRJEB64798_P_NODE_203256_length_166_cov_8.085470_g201490_i0 PRJEB64798 203256 166 8.08547 13.4218802 Amoeba proteus 5775 Tubulinea other_Eukaryota 53.1 2.72e-6   NR AAD33718.1 5775 g201490 i0 63.4 0.740963855421687 41 15 74.1 0 161 39 1548 1588 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 123 53.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;